View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_22 (Length: 235)
Name: NF5958_low_22
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6254514 - 6254293
Alignment:
| Q |
1 |
attacaccaccctggataaaagtataacgtgacaaattattaaactgaaacaaacatgcgacagaaagacaatgaatnnnnnnntaggaaacttaaaact |
100 |
Q |
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| T |
6254514 |
attacaccaccgtggataaaagtataacgtgacaaattattaaactgaaacaaacatgcgacagaaagacaatgaataaaaaatgaggaaacttaaaact |
6254415 |
T |
|
| Q |
101 |
aacacaatcaaactcatattccacagcgtaggttatgtacttcacacgcagggaattgatgattttgtccatctccatagttggattacggatcagaggt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
6254414 |
aacacaatcaaactcatattccacatcgtaggttatgtacttcacacgcagggaattgatgatttgttccatctccgtagttggattacggatcagaggt |
6254315 |
T |
|
| Q |
201 |
cctgcaaaccaataaattaggt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6254314 |
cctgcaaaccaataaattaggt |
6254293 |
T |
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