View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5958_low_24 (Length: 223)
Name: NF5958_low_24
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 39136297 - 39136071
Alignment:
| Q |
1 |
cattcttgatcgttgaattaagattagat----------agacattttgttttaacgtatttacgatgtttacatttctgatcgttgaattaagattaga |
90 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39136297 |
cattcttgatcgttgaattaagattagatgagatgatgaagacattttgttttaacgtatttacgatgtttacatttctgatcgttgaattaagattaga |
39136198 |
T |
|
| Q |
91 |
cgatgaagactttttatttaaattagttaagaaaacgttgaaatttaaattctttcactttggtcgaaaaatcacgtatacatcgaatgtgtcaaatttt |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
39136197 |
cgatgaagactttttatttaaattagttaagaacacgttgaaatttaaattctttcactttggtccaaaaaccacgtatacatcgaatgtgtcaaatttt |
39136098 |
T |
|
| Q |
191 |
gagtgcggataatctgattttcttcga |
217 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
39136097 |
gagtgcggataatctgatttccttcga |
39136071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University