View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_3 (Length: 489)
Name: NF5958_low_3
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 19807795 - 19807325
Alignment:
| Q |
1 |
agtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19807795 |
agtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcatta |
19807696 |
T |
|
| Q |
101 |
gcagcaattgaagagtcaaaagatctgaacacagcgacctagaatgatttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaaagtcaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19807695 |
gcagcaattgaagagtcaaaagatctgaacacagcgacctagaatgatttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaaagtcaagtg |
19807596 |
T |
|
| Q |
201 |
acacaatcgatcaagcatttaatgtcataaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaatacctctttgaaaataaatccaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19807595 |
acacaatcgatcaagcatttaatgtcataaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaataactctttgaaaataaatccaac |
19807496 |
T |
|
| Q |
301 |
attcaatgtcacaaatgcaacaagaatggaccaaatatatagcaactacaaattgtcctactcaagcaatttggttacggaaaatgccaagtgaaacgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19807495 |
attcaatgtcacaaatgcaacaagaatggaccaaatatatagcaactacaaattgtcctactcaagcaatttggttacggaaaatgccaagtgaaacgta |
19807396 |
T |
|
| Q |
401 |
cattgtattgtataagaactaacgaaaacaccatgtatacatctaggaactagaaacattcatatcaatta |
471 |
Q |
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| T |
19807395 |
cattgtattgtataagaactaacgaaaacaccatgtatacatctaggaactagaaacatttatatcaatta |
19807325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 19968690 - 19968873
Alignment:
| Q |
48 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatga |
147 |
Q |
| |
|
|||||||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||| |||||| |||| |||| |||||| | | ||||| |
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| T |
19968690 |
aagtcatggagaaagttatgcgcacacaaacaagttgattcaattacgccgtagcagcaattcaagagtaaaaatatctaaacacaataagcataaatga |
19968789 |
T |
|
| Q |
148 |
tttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaaagtcaagtgacacaatcgatcaagcatttaatgtcataaat |
232 |
Q |
| |
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| T |
19968790 |
tttgcaagcatccttggattcctatgaaatgcaaatgagtgaagggtcaagtgaca-aaccaatcaagcatttaatgtcataaat |
19968873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 217
Target Start/End: Original strand, 1347021 - 1347192
Alignment:
| Q |
48 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaa-gatctgaacacagcgacctagaatg |
146 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||||||| ||||| | | || ||||| ||||| |
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| T |
1347021 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
1347120 |
T |
|
| Q |
147 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaa-agtcaagtgacacaatcgatcaagca |
217 |
Q |
| |
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|||||||| || ||||| ||||||||||||||| ||| | |||| |||||||||||||||| |||||||| |
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|
| T |
1347121 |
atttgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
1347192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 320
Target Start/End: Original strand, 19653262 - 19653355
Alignment:
| Q |
228 |
taaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaatacctc-tttgaaaataaatccaacattcaatgtcacaaatgcaa |
320 |
Q |
| |
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|||||| | ||||||||||| | || |||||||||||| ||||||| ||| || ||| |||| |||||||| ||||||||||||| |||||| |
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| T |
19653262 |
taaatgagtgatttgtgcaacggaatgtagaccgcaaccaaagaggcaatggatctttttaaaacaaatccaatattcaatgtcacagatgcaa |
19653355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 465
Target Start/End: Complemental strand, 20112426 - 20112381
Alignment:
| Q |
420 |
taacgaaaacaccatgtatacatctaggaactagaaacattcatat |
465 |
Q |
| |
|
|||| ||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
20112426 |
taacaaaaacaccaggtatacatataggagctagaaacattcatat |
20112381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 40031413 - 40031335
Alignment:
| Q |
48 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatct |
126 |
Q |
| |
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||||||||||||| ||| ||| ||||||| |||| |||||||||||||| |||||||| | |||||||||||||||| |
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| T |
40031413 |
aagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaagatct |
40031335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 32227932 - 32227841
Alignment:
| Q |
287 |
aaaataaatccaacattcaatgtcacaaatgcaacaagaatggaccaaatatatagcaactacaaattgtcctactcaagcaatttggttac |
378 |
Q |
| |
|
||||||||||||| |||| | |||| |||||||| || |||||| ||| |||||| | ||||||||| |||||| |||||||||||||| |
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| T |
32227932 |
aaaataaatccaatattctaagtcataaatgcaagaactatggacatcatacatagcatccacaaattgttctactcgagcaatttggttac |
32227841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 465
Target Start/End: Original strand, 32241519 - 32241566
Alignment:
| Q |
417 |
aactaacgaaaacaccatgtatacatctaggaactagaaacattcatat |
465 |
Q |
| |
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||||||| ||||||||| || | |||||||||||||||||||||||||| |
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| T |
32241519 |
aactaacaaaaacaccaggtgt-catctaggaactagaaacattcatat |
32241566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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