View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_5 (Length: 425)
Name: NF5958_low_5
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 21 - 410
Target Start/End: Original strand, 32681872 - 32682261
Alignment:
| Q |
21 |
atcattattttatatattttgtttgtagatgaaatcacaaacgccatataaaactcatacacacaactgtgtggtctttagtttgaactcaataacattg |
120 |
Q |
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| T |
32681872 |
atcattattttatattttttgtttgtagatgaaatcacaaacgccatttaaaactcatacacacaagtgtatggt-tttagtttgaactcaataacattg |
32681970 |
T |
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| Q |
121 |
ttcaatctagatagtaatatcgacgtagttagttgaactaattcttatggacaatttaatattttaatggatttatatgcaaactatagtgtgccaattc |
220 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32681971 |
ttcaatctagttagtaatatcgacatagttagttgaactaatttttatggacaatttaatattttaatggatttatatgcaaactatagtgtgccaattc |
32682070 |
T |
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| Q |
221 |
acacgtctatatagtctgtatttt-tatttatatacgttggaacacgctaaagttgcatcgtggagctgaaaacattgcttcaattagactctttcacat |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32682071 |
acacgtctatatagtctgtattttttatttatatacgttggaacacgctaaagttgcatcgtggagctgaaaacattgcttcaattagactctttcacat |
32682170 |
T |
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| Q |
320 |
gtccactttcaaatatattgcttattttgactgatataaacaaataattgatacattgctcatatcccatgtatccttaatgaagggattg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32682171 |
gtccactttcaaatatattgcttattttgactgatataaacaaataattgatacattgctcatatcccatgtatccttaatgaagggattg |
32682261 |
T |
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