View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_7 (Length: 391)
Name: NF5958_low_7
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 384
Target Start/End: Original strand, 32031915 - 32032278
Alignment:
| Q |
21 |
aaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaagtgaagatgcatgtggaaaca |
120 |
Q |
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| T |
32031915 |
aaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaagtgaagatgcatgtggaaaca |
32032014 |
T |
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| Q |
121 |
aatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaa |
220 |
Q |
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| T |
32032015 |
aatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaa |
32032114 |
T |
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| Q |
221 |
tactacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtcttggtattgtattttaattgtatcaat |
320 |
Q |
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| T |
32032115 |
tactacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtcttggtattgtattttaattgtatcaat |
32032214 |
T |
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| Q |
321 |
ttaatatagttatttcctactagtggttttagattgcaataaagttgtcgttatctctctgctc |
384 |
Q |
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| T |
32032215 |
ttaatatagttatttcctactagtggttttagattgcaataaagttgtcgttatctctctgctc |
32032278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 32065055 - 32065423
Alignment:
| Q |
21 |
aaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaagtgaagatgcatgtggaaaca |
120 |
Q |
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| T |
32065055 |
aaagcaagtgaatttcattactacaaaattgaaggagttgagcattacatgaacaaatacactagtggtgatatagtaagtgaagatgcatgtggaaaca |
32065154 |
T |
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| Q |
121 |
aatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaa |
220 |
Q |
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| T |
32065155 |
aatgtaccaatgattgtaagtgtgttgggtatttctaccataaggatgaatcaaggtgttggatagcttatgatcttcaaactcttactagagttcaaaa |
32065254 |
T |
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| Q |
221 |
tactacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtc---------------------ttggta |
299 |
Q |
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| T |
32065255 |
taccacacatgtgggttatattaaggtgcctaataagtaataagataagcttagatttttccatgggaaggtcttggtatttttttttttttttttggta |
32065354 |
T |
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| Q |
300 |
ttgtattttaattgtatcaatttaatatagttatttcctactagtggttttagattgcaataaagttgt |
368 |
Q |
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| T |
32065355 |
ttgtattttaattgtatcaatttaattttgttatttcctactagttgttttagaatgcaataaagttgt |
32065423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 32072378 - 32072458
Alignment:
| Q |
21 |
aaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaagt |
101 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||| |
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| T |
32072378 |
aaagcaagtgagtttcattactacaaaattgaaggagttgagcattatatgagcaaatacactgttggtgatagagtaagt |
32072458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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