View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_8 (Length: 341)
Name: NF5958_low_8
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 12541950 - 12541613
Alignment:
| Q |
1 |
cgataattaagtcgatgactccttagcttctgcttgaatttcataatcatttgccaattt--catcaacctgcataaatgatgtacaatcatcaacacac |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12541950 |
cgataattaagtcgatgactccttagcttctgcttgaatttcatattcatttgccaattcaccatcaacctgcataaatgatgtacaatcatcaacacac |
12541851 |
T |
|
| Q |
99 |
aattagttccaattagttccaattattgaattttcctcttgcgaacaacttaatatcagtctcaactgttgtaggccttgaataaattagttaagcaagt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12541850 |
aattagttccaattagttccaattattgaattttcctcttgcgaacaacttaatatcagtctcaactgttgtaggccttgaataaattagttaagcaagt |
12541751 |
T |
|
| Q |
199 |
ggatgcattttgttaaccaaaacttagtaagaaaaattgtaaatgctaccacaatgagactgatattgaacaagtgttgccgatggtggaccatggcgga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12541750 |
ggatgcattttgttaaccaaaacttagtaagaaaaattgtaaatgctaccacaatgagactgatattgaacaagtgttgccgatggtggaccatggcgga |
12541651 |
T |
|
| Q |
299 |
gagccaaaatcccaccataccggccgctctgtgctgct |
336 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||| |
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| T |
12541650 |
gagccaaaatcccaccataccggccgctttgtggtgct |
12541613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 336
Target Start/End: Complemental strand, 12509591 - 12509416
Alignment:
| Q |
162 |
aactgttgtaggccttgaataaattagttaagcaagtggatgcattttgttaaccaaaactt-----------agtaagaaaaattgtaaatgctaccac |
250 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
12509591 |
aactgttgtaggccttgattaaattagttaagcaagtggatgcatctagttaaacagaacttgacaagttactagtaagaaaaattgtaaatgctaccac |
12509492 |
T |
|
| Q |
251 |
aatgagactgatattgaacaagtgttgccgatggtggaccatggcggagagccaaaatcccaccataccggccgctctgtgctgct |
336 |
Q |
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| T |
12509491 |
aatgagactgatattgaacaagtgttgccgatggt----------ggagagccaaaatcccaccataccggccgctttgtggtgct |
12509416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 12489163 - 12489058
Alignment:
| Q |
162 |
aactgttgtaggccttgaataaattagttaagcaagtggatgcattttgttaaccaaaact-----------tagtaagaaaaattgtaaatgctaccac |
250 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| |||||| ||||||||||||||||||||| |
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| T |
12489163 |
aactgttgtaggccttgattaaattagttaagcaagtggatgcatctagttaaacaaaacttgacaaggtactagtaaaaaaaattgtaaatgctaccac |
12489064 |
T |
|
| Q |
251 |
aatgag |
256 |
Q |
| |
|
|||||| |
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|
| T |
12489063 |
aatgag |
12489058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 12487914 - 12487856
Alignment:
| Q |
257 |
actgatattgaacaagtgttgccgatggtggaccatggcggagagccaaaatcccaccatac |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
12487914 |
actgatattgaccaagtgttgccgatggtgga---tggcggagagccaaaatcccaccatac |
12487856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 10290161 - 10290117
Alignment:
| Q |
287 |
gaccatggcggagagccaaaatcccaccataccggccgctctgtg |
331 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
10290161 |
gaccatggcggagagccaaaatcccaccatactggccgctatgtg |
10290117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 21039970 - 21040017
Alignment:
| Q |
284 |
gtggaccatggcggagagccaaaatcccaccataccggccgctctgtg |
331 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
21039970 |
gtggtccatggcggagagccaaaatcccgccataccggccgctttgtg |
21040017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 19160313 - 19160351
Alignment:
| Q |
281 |
atggtggaccatggcggagagccaaaatcccaccatacc |
319 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||| |
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| T |
19160313 |
atggtggtccatggcagagagccaaaatcccaccatacc |
19160351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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