View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5959_low_3 (Length: 246)
Name: NF5959_low_3
Description: NF5959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5959_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 30244380 - 30244211
Alignment:
| Q |
66 |
cttgatgatcagactcgctaatgggcattgagctcctacccacaccctgattatcaaaatcgccatcctcgatgccacgactgcactcattgtcacctcc |
165 |
Q |
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| T |
30244380 |
cttgatgatcagactcgctaatgggcattgagctcctacccacaccctgataatcaaaatcgcaatcctcgatgccacgactggactcgttgtcacctcc |
30244281 |
T |
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| Q |
166 |
tccactccaaaagatgttctcttcatcattaggcacgtttgttccagttaacccatttatctgtcgaccc |
235 |
Q |
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| T |
30244280 |
tccactccaaaagatgttctcttcatcattaggtacgtttgttccggttaatccatttatctgtcgaccc |
30244211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 29870354 - 29870496
Alignment:
| Q |
66 |
cttgatgatcagactcgctaatgggcattgagctcctacccacaccctgattatcaaaatcgccatcctcgatgccacgactgcactcattgtcacctcc |
165 |
Q |
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| T |
29870354 |
cttgatgatcagagttgctaatgggcacgcagctctgacccacgccctcactatcaaaatcgcaatcctcgataccaccaccggactcgttgtcacctcc |
29870453 |
T |
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| Q |
166 |
tccactccaaaagatgttctcttcatcattaggcacgtttgtt |
208 |
Q |
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| T |
29870454 |
tccactccaaaagacgttctcttcatcattaggtacgtttgtt |
29870496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 29851507 - 29851605
Alignment:
| Q |
110 |
ccctgattatcaaaatcgccatcctcgatgccacgactgcactcattgtcacctcctccactccaaaagatgttctcttcatcattaggcacgtttgtt |
208 |
Q |
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| T |
29851507 |
ccctgactatcaaaatcgcaatcctcgataccaccaccggacttattgtcatctcctccactccaaaagacgttctcttcatcattaggtacgtttgtt |
29851605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 30398558 - 30398630
Alignment:
| Q |
66 |
cttgatgatcagactcgctaatgggcattgagctcctacccacaccctgattatcaaaatcgccatcctcgat |
138 |
Q |
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| T |
30398558 |
cttgatgatcagacttgctaatgggcacagagctccgacccatgccccgattgtcaaaatcgcaatcctcgat |
30398630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 30747807 - 30747873
Alignment:
| Q |
113 |
tgattatcaaaatcgccatcctcgatgccacgactgcactcattgtcacctcctccactccaaaaga |
179 |
Q |
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| T |
30747807 |
tgattatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaaga |
30747873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 30058393 - 30058441
Alignment:
| Q |
150 |
actcattgtcacctcctccactccaaaagatgttctcttcatcattagg |
198 |
Q |
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| T |
30058393 |
actcattgtcacatcctccactccgaacgatgtcatcttcatcattagg |
30058441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 30714968 - 30714920
Alignment:
| Q |
150 |
actcattgtcacctcctccactccaaaagatgttctcttcatcattagg |
198 |
Q |
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| T |
30714968 |
actcattgtcacatcctccactccgaacgatgtcatcttcatcattagg |
30714920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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