View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5959_low_5 (Length: 236)
Name: NF5959_low_5
Description: NF5959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5959_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 39546288 - 39546152
Alignment:
| Q |
81 |
cctttttttctttctttcatcaccatcatcannnnnnnnnactaacaataccaaacaatagaaatatgcataagtggaagacaaaatctggcgaaatcta |
180 |
Q |
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| T |
39546288 |
cctttttttctttctttcatcatcatcatcatttttttt-attaacaataccaaacaatagaaatatgcataagtggaagacaaaatctggcgaaatcta |
39546190 |
T |
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| Q |
181 |
atatcatattaatcagaatgaagatctatacatcatcc |
218 |
Q |
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| T |
39546189 |
atatcatattaatcagaatgaagatctatacatcatcc |
39546152 |
T |
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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 37367271 - 37367363
Alignment:
| Q |
131 |
ccaaacaatagaaatatgcataagtggaagacaaaatctggcgaaatctaatatcatatta-----atcagaatgaagatctatacatcatcc |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
37367271 |
ccaaacaatagacatatgcataagtggaagacaaaatctgcagaaatctaatattatattatcattatcagaatgaagatctatacatcatcc |
37367363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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