View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5960_high_1 (Length: 353)
Name: NF5960_high_1
Description: NF5960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5960_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 17258691 - 17258371
Alignment:
| Q |
9 |
cctcctaataataagactgtgtcatgatttagaaattaattgnnnnnnnnnnnnnngatttggcagatggcaaaactaataatctacctatcaaaaccga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17258691 |
cctcctaataataagactgtgtcatgatttaggaattaattgtttttttg------gatttggcagatggcaaaacaaataatctacctatcaaaaccga |
17258598 |
T |
|
| Q |
109 |
agaattgaaccaatactcgacacnnnnnnncgaacatgacctctaccctggaaagaaaatgatcttaggtaacaataattctcttagaaagacagtgcga |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
17258597 |
agaattgaaccaatactcgacactttttttcgaacatgacctctaccctggaaagaaaatgatcttaggtaacaataattctcttagaaatacagtacga |
17258498 |
T |
|
| Q |
209 |
ccattcggaaaaccaaaacaaggtgtcacagattccatatggctggcaaacaaagagagacaaagtcttgacgacttttgtaacagtccaactgcgacag |
308 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17258497 |
ccattcggaaaaccaagacaaggtatcacagattccatatggctggcaaacaaagagagacaaagtcttgacgacttttgtaacagtccaactgcgacag |
17258398 |
T |
|
| Q |
309 |
gagaacgcaaacattgtgtatcatcct |
335 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17258397 |
gagaacgcaaacattgtgtatcatcct |
17258371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 17986973 - 17986937
Alignment:
| Q |
141 |
aacatgacctctaccctggaaagaaaatgatcttagg |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17986973 |
aacatgacctctaccctggaaagaaaatgagcttagg |
17986937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University