View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5960_low_1 (Length: 495)
Name: NF5960_low_1
Description: NF5960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5960_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 25655047 - 25654893
Alignment:
| Q |
62 |
ctcccatcatggcccatatgatttctttcttggcccatgtccatcctaatgtccatcccgggttcataatgtttcgatatagttgaaagttaaacaaagt |
161 |
Q |
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| T |
25655047 |
ctcccatcatggcccatattatttctttcttggcccatgtccatcctaatgtccatcccggattcataatgtttcgatatagttgaaagttgaacaaagt |
25654948 |
T |
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| Q |
162 |
tacagttgcctgcaaaagtttgacatcatagtatattgattagtttgaagatagc |
216 |
Q |
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| T |
25654947 |
tacagttgcctgcaaaagtttgacatcatagtatatcgatcagtttgaagatagc |
25654893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 264 - 431
Target Start/End: Complemental strand, 25654884 - 25654701
Alignment:
| Q |
264 |
taattgtggagatcaacccctcgaagtaactgagattcatttaaaagattcaccgttttgaaagt----------------ttggaagttacttaccata |
347 |
Q |
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| T |
25654884 |
taattgtggagatcaacccctcgaagtaactgagattcatttaaaagattcaccgttttgaaaatgtttttttctaagaacttggaaatgacttaccata |
25654785 |
T |
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| Q |
348 |
taaccatctgatgtccaagacataatatcccatcttattgtcacattcccagttggatccaatggatcaaatgcctctacaagc |
431 |
Q |
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| T |
25654784 |
tatccatctgatgtccatgacataatatcccatcttattgtcacatttccagttggatccaatggatcaaatgcctctacaagc |
25654701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Complemental strand, 25654668 - 25654639
Alignment:
| Q |
464 |
catttatccaattatattcttagtcctatg |
493 |
Q |
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| T |
25654668 |
catttatccaattatattcttagtcctatg |
25654639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 5555274 - 5555353
Alignment:
| Q |
337 |
tacttaccatataaccatctgatgtccaagacataatatcccatcttattgtcacattcccagttggatccaatggatca |
416 |
Q |
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| T |
5555274 |
tacttaccacataaccatctggtgtccaagacataacatcccatttgattgttatatttccatttggatccaaaggatca |
5555353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 5554701 - 5554764
Alignment:
| Q |
75 |
ccatatgatttctttcttggcccatgtccatcctaatgtccatcccgggttcataatgtttcga |
138 |
Q |
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| T |
5554701 |
ccatataacttctttcttagcccatgtccatcctaaggtccatcccggattcattatgtgtcga |
5554764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 5012549 - 5012607
Alignment:
| Q |
75 |
ccatatgatttctttcttggcccatgtccatcctaatgtccatcccgggttcataatgt |
133 |
Q |
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| T |
5012549 |
ccatataacttctttcttagcccatgaccatcctaatgtccatcccggattcattatgt |
5012607 |
T |
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