View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_10 (Length: 427)
Name: NF5961_high_10
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 44 - 409
Target Start/End: Complemental strand, 476119 - 475739
Alignment:
| Q |
44 |
gagtgtagcctattgtatagagaaattgatacaatttttcattctttaaatttaacacagttttttcaatcaacagtgtaatatatattcatcagctaaa |
143 |
Q |
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| T |
476119 |
gagtgtagcctattgtatagagaaattgatacaatttttcattctttaaatttaacacagttttttcaatcaacagtgtaatatatattcatcagctaaa |
476020 |
T |
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| Q |
144 |
aattttataatttacctttcttgaagattcattttaaaaatttcatttgtctcataattaaccatt--ttatgctcttaattttgtatttctctcacaat |
241 |
Q |
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| T |
476019 |
aaatttataatttacctttcttgaagattcattttaaaaatttcatttgtctcataattaaccattgattatgctcttaagtttgtatttctctcacaat |
475920 |
T |
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| Q |
242 |
aaatgaatacataaatgacaaagagtaaaaaagtaacttcaactgttattctcttcagctatatcatggaaagcnnnnnnnnnnnngatacagtgatgat |
341 |
Q |
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| T |
475919 |
aaatgaatacataaatgacaaagagtaaaaaagtaacttcaactgttattctcttcagctatatcatggaaagcaaacataaaaaagatacagtgatgat |
475820 |
T |
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| Q |
342 |
gacattaatttt-------------aattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattc |
409 |
Q |
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| T |
475819 |
gacattaattttaattaagctaaaaaattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattc |
475739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 476193 - 476144
Alignment:
| Q |
1 |
agactaagagtggtgtaaaagatgaagctagtttattagtgaagagtgta |
50 |
Q |
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| T |
476193 |
agactaagagtggtgtaaaagatgaagctagtttattagtgaagagtgta |
476144 |
T |
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