View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_12 (Length: 402)
Name: NF5961_high_12
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 52180310 - 52180698
Alignment:
| Q |
14 |
ttctctacgttggtttgttcagtggtgtatgggtaccgattttggacacaaattgggttacctagtaaaacatttaaattttcagggaattttcatatgg |
113 |
Q |
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| T |
52180310 |
ttctctacgttggtttgttcagtggtttatgggtaccgattttggacacaaattgggttacctagtaaaacatttaaattttcagggaattttcatatgg |
52180409 |
T |
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| Q |
114 |
tgttgtttggttgcaatttggcgtgccatgttggagtacttttgttgcattattctagaggaggatgtaatggaattggagcatgggtttttaattcttt |
213 |
Q |
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| T |
52180410 |
tgttgtttggttgcaatttggcgtgccatgttggagtacttttgttgcattattctagaggaggatgtaatggaattggagcatgggtttttaattcttt |
52180509 |
T |
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| Q |
214 |
tttaaatgttttaattctttggcatttcttgaagtcgtatgttgatacgaactgtcaaaggaaggatgcttcttccaaaagagaggatgactctgctaag |
313 |
Q |
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| T |
52180510 |
tttaaatgttttaattctttggcatttcttgaagtcgtatgttgatacgaactgtcaaaggaaggatgcttcttccaaaagagaggatgactctgctaag |
52180609 |
T |
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| Q |
314 |
ggtacttcagcacatgataattaacaatatgctaagtcaaagccagagaaatttgacaattagaagaattttcaataatatcatttgag |
402 |
Q |
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| T |
52180610 |
ggtacttcagcacatgataattaacaatatgctaagtcaaagccagagaaatttgacaattagaagaattttcaataatatcatttgag |
52180698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 7297125 - 7297245
Alignment:
| Q |
101 |
aattttcatatggtgttgtttggttgcaatttggcgtgccatgttggagtacttttgttgcattattctagaggaggatgtaatggaattggagcatggg |
200 |
Q |
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| T |
7297125 |
aattttcagatggtgttgttgggatgcaaccttgtttgtcatgttggtgttcttttgttacatttatttagaggtgggtgtaatggaattggtgcttggg |
7297224 |
T |
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| Q |
201 |
tttttaattcttttttaaatg |
221 |
Q |
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| T |
7297225 |
ttttcaattctattttgaatg |
7297245 |
T |
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