View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_15 (Length: 328)
Name: NF5961_high_15
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_15 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 7916059 - 7916207
Alignment:
| Q |
56 |
ctcaatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttatcatgacgacctggcggatcctaaaatatttttctaac |
155 |
Q |
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| T |
7916059 |
ctcaatatcagcattatctcatcaaacattgaattgagacataatatgatacaaatatcttatcatgacgac-tggtggatcctaaaatatttttctaac |
7916157 |
T |
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| Q |
156 |
ctgtttggtggtgatgataagatataaaataagataaagatataatctta |
205 |
Q |
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| T |
7916158 |
ctgtttggtggcgatgataagatatagaataagataaagatataatctta |
7916207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 203 - 310
Target Start/End: Original strand, 7918195 - 7918305
Alignment:
| Q |
203 |
ttatcgtgtgtttaatgctcacatgataacagatcaaataatgttatttattcaattatacttttggtagatgcctcatccttaca---tgatgtaatat |
299 |
Q |
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| T |
7918195 |
ttatcgtgtgtttaatgcccacatgataacagattaaataatattatttattcaattatacttttgctacatgcctcatccttacatattgatgtaatat |
7918294 |
T |
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| Q |
300 |
atatcatattt |
310 |
Q |
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| T |
7918295 |
atatcatattt |
7918305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 8408915 - 8408853
Alignment:
| Q |
56 |
ctcaatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttat |
118 |
Q |
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| T |
8408915 |
ctcaatatctgtattgtctcatcaaacattgaattgagacatgatatgatacaattatgttat |
8408853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 8437800 - 8437730
Alignment:
| Q |
58 |
caatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttatcatgacgacc |
128 |
Q |
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| T |
8437800 |
caatatcggtattgtctcattaaacattgaattgagacatgatatgatacaattatcttattatggcgacc |
8437730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 8414226 - 8414172
Alignment:
| Q |
72 |
tctcatcaaagattgaattgagacataatatgatacaattatcttatcatgacga |
126 |
Q |
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| T |
8414226 |
tctcatcaaatattaaattgagacataatatgatataattatcttattatgacga |
8414172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 8428272 - 8428338
Alignment:
| Q |
56 |
ctcaatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttatcatg |
122 |
Q |
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| T |
8428272 |
ctcaatatcaatattgtctcatcaaacattgaattgaaacataatatgatacatttagattatcatg |
8428338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 73166 - 73227
Alignment:
| Q |
57 |
tcaatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttat |
118 |
Q |
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| T |
73166 |
tcaatatcagtattttctcattaaatattgaattgagacatgatatgatacaattatcttat |
73227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 35978397 - 35978447
Alignment:
| Q |
69 |
ttgtctcatcaaagattgaattgagacataatatgatacaattatcttatc |
119 |
Q |
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| T |
35978397 |
ttgtctcatcgaacaatgaattgagacatgatatgatacaattatcatatc |
35978447 |
T |
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