View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_16 (Length: 307)
Name: NF5961_high_16
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 49 - 226
Target Start/End: Original strand, 6358843 - 6359020
Alignment:
| Q |
49 |
cttgatctgtctaaactgaagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaacagataaagcaaatttcaaccggaataaa |
148 |
Q |
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| T |
6358843 |
cttgatctgtctaaactgaagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaatagataaagcaaatttcaaccggaataaa |
6358942 |
T |
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| Q |
149 |
atcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttctgactataacttgtacctgc |
226 |
Q |
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| T |
6358943 |
atcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttctgactataacttgtacctgc |
6359020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6358789 - 6358822
Alignment:
| Q |
1 |
tgcatactcagcaaaacttggattcgagaccttt |
34 |
Q |
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| T |
6358789 |
tgcatactcagcaaaacttggattcgagaccttt |
6358822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 298
Target Start/End: Original strand, 6359029 - 6359060
Alignment:
| Q |
267 |
ctttttatgtcttaccctttctgtatattctt |
298 |
Q |
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| T |
6359029 |
ctttttatgtcttaccctttctgtatattctt |
6359060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 32857631 - 32857478
Alignment:
| Q |
67 |
aagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaacagataaagcaaatttcaaccggaataaaatcactttcaaaagaagc |
166 |
Q |
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| T |
32857631 |
aagatggaaaagcatttcaatgccaagaatgtgggttagttagagacaaggaagagataaagcaaattgcaactgaaataaaatttctattagaagaagc |
32857532 |
T |
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| Q |
167 |
ttctaatccttcttctagtaacaatatcatttaacatttctgactataacttgt |
220 |
Q |
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| T |
32857531 |
ttctaagccttcttccaatggcagtatcctttaacatttctgactagaacttgt |
32857478 |
T |
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