View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_18 (Length: 302)
Name: NF5961_high_18
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 32229907 - 32229619
Alignment:
| Q |
1 |
aattgaataatatatatgcatcagaagtaagaaaaatataaacagaggcagtatcagtaaagtaaagagcataactctattaccttacatattggatcca |
100 |
Q |
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| T |
32229907 |
aattgaataatatatatgcaacagaattaagaaaaatataaacagaggcaggatcagtaaagtaaagagcataactctgttaccttacatattggatcca |
32229808 |
T |
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| Q |
101 |
acttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacacaata--cttagaagggatggcaatgcaagtttagtgtcctt |
198 |
Q |
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| T |
32229807 |
acttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacacaatactcttaaaagggatg-----gcaagtttagtgtcctt |
32229713 |
T |
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| Q |
199 |
attaattaatcaaacttggtaaagtgaaatcaacgatattgttcatttaaataagcctccaacagactttgcagcaccatcaaccgcacctttg |
292 |
Q |
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| T |
32229712 |
attaattaatcaaacttggtaaagtgaaatcaacgatattgttcatttaaataagcctccaacagactttgcagcaccatcaaccgcacctttg |
32229619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32225062 - 32224858
Alignment:
| Q |
1 |
aattgaataatatatatgcatcagaagtaagaaaaatataaaca----gaggcagtatcagtaaagtaaagagcataactctattaccttacatattgga |
96 |
Q |
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|||||||||||| ||||||| ||||| || |||||| ||||||| ||||||| ||||||||||| ||||||| | |||| ||||||||||||||||| |
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| T |
32225062 |
aattgaataataaatatgcaacagaattaggaaaaacataaacaatcagaggcaggatcagtaaagtgaagagcagagctctgttaccttacatattgga |
32224963 |
T |
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| Q |
97 |
tccaacttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacacaatacttagaagggatggcaatgcaagtttagtgtcc |
196 |
Q |
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| T |
32224962 |
tccaacttagtatatcctatcctatagtttatatgataagatacacagtgctaacttatacac-atactt-gaagggatg-----acaagtttagtatcc |
32224870 |
T |
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| Q |
197 |
ttattaattaat |
208 |
Q |
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|||||||||||| |
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| T |
32224869 |
ttattaattaat |
32224858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 32220424 - 32220388
Alignment:
| Q |
103 |
ttagtatatcctatcctatagattatatgataagata |
139 |
Q |
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| T |
32220424 |
ttagtatatcctatcctatagattacatgataagata |
32220388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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