View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5961_high_2 (Length: 496)
Name: NF5961_high_2
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 32988119 - 32987644
Alignment:
| Q |
7 |
atatcaacctactagcatatcataacagtgagctaaccaaaagaagctaaagaatacgaggtgtagt-----tttaaggttacaaatttgccatcatgct |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32988119 |
atatcaacctactagcatatcataacagtgagccaaccaaaagaagctaaagaatacgaggtgtagtgtagttttaaggttacaaatttgccatcatgct |
32988020 |
T |
|
| Q |
102 |
aactaagaaaacaatccacgtggtcaacaaatctatgtctttttatcgactttccacagcttcattctccactgcttatgaacgtgctgaagtatatgtt |
201 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32988019 |
aactaagaaaacaatccacatggtcaacaaatctatgtctttttatcgactttccacagcttcattctctactgcttatgaacgtgctgaagtatatgtt |
32987920 |
T |
|
| Q |
202 |
cttctcttcaacttatggaaattttgacaattata--acttctcacannnnnnnaatctctacatacattttttatataccagaaaaaagtattatagtt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32987919 |
cttctcttcaacttatggaaattttgacaattatataacttcacacatttttttaatctctacatacattttttatctaccagaaaaaagtattatagta |
32987820 |
T |
|
| Q |
300 |
ataatatagataggttggtcttgcaccatgtataaaggtatttttgtcattgaattaaaaagttgtatcatattttatttaatttaatgatgagattgat |
399 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32987819 |
ttaatatagataggttggt-ttgcaccatgtataaaggtatttttgtcattgaattaaaaagttatatcatattttatttaatttaatgatgagattgat |
32987721 |
T |
|
| Q |
400 |
taattaaatgatgaaaattagtttgtacatgatataggatttatctcacttttttgaaggaaggatttatctcactt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
32987720 |
taattaaatgatgaaaattagtttgtacatgatacaagatttatcttacttttttgaaggaaagatttacctcactt |
32987644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 25654919 - 25655004
Alignment:
| Q |
347 |
cattgaattaaaaagttgtatcatattttatttaatttaatgatgagattgattaattaaatgatgaaaattagtttgtacatgat |
432 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||| | ||| ||| |||||| |||| |||||||||||||| |||||||| |
|
|
| T |
25654919 |
cattgaataaaaaagtcacatcatatttattttaatttaacgttgatattcattaatcaaataatgaaaattagtttatacatgat |
25655004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 8223164 - 8223101
Alignment:
| Q |
356 |
aaaaagttgtatcatattttatttaatttaatgatgagattgattaattaaatgatgaaaatta |
419 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| ||||| ||| || |||||| ||||||| |
|
|
| T |
8223164 |
aaaaagttatatcgtattttatttaatttaatgataagatttattgatctaatgataaaaatta |
8223101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 41957524 - 41957566
Alignment:
| Q |
345 |
gtcattgaattaaaaagttgtatcatattttatttaatttaat |
387 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
41957524 |
gtcattggattaaaaagtcatatcatattttatttaatttaat |
41957566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 23940630 - 23940554
Alignment:
| Q |
356 |
aaaaagttgtatcatattttatttaatttaatgatgagattgattaattaaatgatgaaaattagtttgtacatgat |
432 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| ||||||| ||| || || |||||||| ||| |||| |||||| |
|
|
| T |
23940630 |
aaaaagtcgtattatatttcatttaatttaatggtgagatttattgatctaacgatgaaaagtagcttgtgcatgat |
23940554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University