View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_21 (Length: 291)
Name: NF5961_high_21
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 19330472 - 19330214
Alignment:
| Q |
19 |
tgacaagctcaaagacaaacaataaaaacagtgaaaaccatgaactaactgaaaacactaatccagcttcgacaaagaattcctgagtagtgaaagatac |
118 |
Q |
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| T |
19330472 |
tgacaagctcaaagacaaacgataaaaacagtgaaaaccatgaactaactgaaaacactaatccagcttcaacaaagaattcctgagtagtgaaagatac |
19330373 |
T |
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| Q |
119 |
atgaaatttgtggagaaaataaatgagaaaaatgaagtgaaacaaaataatccacagatgagtattttttccacaactttttaatacatgtattattatc |
218 |
Q |
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| T |
19330372 |
atgaaatttgtggagaaaataaatgagaaaaatgaagtgaaacaaaataatccacagatgattattttttccacaactttttaatacatgta---ttatc |
19330276 |
T |
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| Q |
219 |
tccgcaacataaattttttagatccgtcactaagcacatgtaaacaaagcaactgtattcat |
280 |
Q |
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| T |
19330275 |
tccgcaacataaattttttagatccgtcactaagcacatgtaaacaaagcaaccgtattcat |
19330214 |
T |
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