View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_25 (Length: 283)
Name: NF5961_high_25
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 49426614 - 49426351
Alignment:
| Q |
1 |
gacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacata |
100 |
Q |
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| T |
49426614 |
gacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacata |
49426515 |
T |
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| Q |
101 |
ttctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatgcccaagggcctcccctat |
200 |
Q |
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| T |
49426514 |
ttctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagaactcaaaacatatagagagttattattatgcccaagggcctcccctat |
49426415 |
T |
|
| Q |
201 |
atgtgaagttgtgatcgattgcaagcaaggttctatgtaagtagcagttcttctattcacttct |
264 |
Q |
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| T |
49426414 |
atgtgaagttgtgatcgattgcaagcgaggttctatgtaagtagcagttcttctattcacttct |
49426351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 49432788 - 49432646
Alignment:
| Q |
68 |
gccaagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatag |
167 |
Q |
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| T |
49432788 |
gccaagaaagtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatccattgtggtaaagacttcgaaatattaag |
49432689 |
T |
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| Q |
168 |
agagttattattatgcccaagggcctcccctatatgtgaagtt |
210 |
Q |
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| T |
49432688 |
agagttactcttatgccatagggcttctcctatatgtgaagtt |
49432646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 49415963 - 49416098
Alignment:
| Q |
2 |
acccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacatat |
101 |
Q |
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||||||||| |||||| || ||||||||||| ||||| |||||||| | || |||| ||||| ||| ||||| | |||||||||||||||| | | || |
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| T |
49415963 |
acccaatatttgttccacaaagtctttcattacaacttaaaacttgcaaacttctgaacttcttaggcgaagaaggcgagcttctattggcaagatacat |
49416062 |
T |
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| Q |
102 |
tctaaagaatgcaagagttttgcaaaccatgaaaat |
137 |
Q |
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| | |||||||| ||||||||||||||||||||||| |
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| T |
49416063 |
tttgaagaatgctagagttttgcaaaccatgaaaat |
49416098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 17641267 - 17641083
Alignment:
| Q |
1 |
gacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacata |
100 |
Q |
| |
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|||||||||| |||||| || ||| |||||||| | ||| ||| |||| | || | || ||| | ||||||||| | |||||||||||||||| | | | |
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| T |
17641267 |
gacccaatatttgttccgcaatgtttttcattacaccttaaaatttgcaaagttctaaacttcataggccaagaaggcgagcttctattggcaagaaaca |
17641168 |
T |
|
| Q |
101 |
ttctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatgccc |
185 |
Q |
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|||| |||||||||| ||||||||||||||||||||| |||| || |||| ||||||| | | ||||||||||| || ||||| |
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| T |
17641167 |
ttctgaagaatgcaaaagttttgcaaaccatgaaaatacattgcagtgaagacctcaaaatagaaagagagttattcttgtgccc |
17641083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 49445393 - 49445331
Alignment:
| Q |
77 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca |
139 |
Q |
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| T |
49445393 |
gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca |
49445331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 43362340 - 43362472
Alignment:
| Q |
77 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttatt |
176 |
Q |
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|||||||| ||||||||| | ||||| | ||||||||||||||||||| ||||||| ||||| |||| || | || |||||| | | ||||| || | |
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| T |
43362340 |
gtgagcttttattggcaatatatattgtgaagaatgcaagagttttgc-aaccatggaaatctattgcagtgacgaactcaaactagaaagagaattgtc |
43362438 |
T |
|
| Q |
177 |
attatgcccaagggcctcccctatatgtgaagtt |
210 |
Q |
| |
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||||| ||||||||||| |||| |||||||||| |
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| T |
43362439 |
cttatgtccaagggcctctcctacatgtgaagtt |
43362472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 1965543 - 1965709
Alignment:
| Q |
25 |
ctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgc |
124 |
Q |
| |
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||||||||| ||||| |||||||| |||| | || ||||| |||||||||||||||||||| ||||||| | |||||||||||||| ||| |||||||| |
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| T |
1965543 |
ctttcattacaacttaaaacttgccaaattcttaatttctttggccaagaaagtgagcttcttttggcaagatatattctaaagaatacaaaagttttgc |
1965642 |
T |
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| Q |
125 |
aaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatgcccaagggc |
191 |
Q |
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|||||||||||||| |||||||| |||| |||||| || ||||||||| | ||||||| |||||| |
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| T |
1965643 |
aaaccatgaaaatcgattgtggtgaagacttcaaaatattaagagagttactcttatgccaaagggc |
1965709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 41662563 - 41662531
Alignment:
| Q |
106 |
aagaatgcaagagttttgcaaaccatgaaaatc |
138 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
41662563 |
aagaatgcaagagttttacaaaccatgaaaatc |
41662531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 25457808 - 25457687
Alignment:
| Q |
70 |
caagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagag |
169 |
Q |
| |
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||||||||||||| ||| ||||||| | |||||||||||||| ||| |||||||||||||||||||||| |||||||| |||| |||||| || |||| |
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| T |
25457808 |
caagaaagtgagcatcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatcgattgtggtgaagacttcaaaatattaagag |
25457709 |
T |
|
| Q |
170 |
agttattattatgcccaagggc |
191 |
Q |
| |
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||||| | ||||||| |||||| |
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| T |
25457708 |
agttactcttatgccaaagggc |
25457687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 986036 - 985984
Alignment:
| Q |
86 |
tattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatc |
138 |
Q |
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|||| |||| |||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
986036 |
tattagcaagacatattctaaagaatgcaagaattttacaaaccatgaaaatc |
985984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 996783 - 996744
Alignment:
| Q |
98 |
atattctaaagaatgcaagagttttgcaaaccatgaaaat |
137 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||| |
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| T |
996783 |
atattctaaagaatgcaagacttttacaaaccatgaaaat |
996744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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