View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_27 (Length: 277)
Name: NF5961_high_27
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 32230371 - 32230121
Alignment:
| Q |
17 |
aagaagaaagaatgaaacgctgaaagcaaaagataaggcaaacattattagaacaacaggaaagcttccaggggcttgttcctgcttctaagaaagaaag |
116 |
Q |
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| T |
32230371 |
aagaagaaagaatgaaacgctgaaagcaaaagataaggcaaacattattagaacaactggaaagcttccaggggcttgttcctgcttctaagaatgaaag |
32230272 |
T |
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| Q |
117 |
aacaccaataagtatatatatgtgtaca-taatgtcatttggttttagtaacaaaacgaagttctgtaattatatgtttcactgttctatgaaatgtaca |
215 |
Q |
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|| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32230271 |
aaaaccaataagtatatatatgtacataataatgtcatttggttttagtaacaaaacgaagttctgtaattatatgtttcactgttctatgaaatgtaca |
32230172 |
T |
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| Q |
216 |
tgaacatcatgtatagttgcagtatacaaaatacacttggtttttcttctt |
266 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32230171 |
tgaacatcatgtatagttgcagtatacaaaaaacacttggtttttcttctt |
32230121 |
T |
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