View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5961_high_3 (Length: 488)
Name: NF5961_high_3
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 4240632 - 4240433
Alignment:
| Q |
18 |
attataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcctaattccttactacaaggtcaaaaccaattcttcaatatttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4240632 |
attataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcctaattccttactacaaggtcaaaaccaattcttcaatatttc |
4240533 |
T |
|
| Q |
118 |
tcctgttgatcaggacactcctaccttctttaacttacttggagactttggagaaaactatgatcatcatcatcatcaggtaagatcatatatgatccct |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4240532 |
tcctgttaatcaggacactcctaccttctttaacttacttggagactttggagaaaactatgatcatcatcatcatcaggtaagatcatatatgatccct |
4240433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 4240397 - 4240307
Alignment:
| Q |
251 |
atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4240397 |
atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag |
4240307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 4240135 - 4240083
Alignment:
| Q |
352 |
tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgtt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4240135 |
tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgtt |
4240083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 19939718 - 19939547
Alignment:
| Q |
18 |
attataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcctaattccttactacaaggtcaaaaccaattcttcaatatttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
19939718 |
attataactcatcgatccatccatccatgactcttgtttctctgaatccaccaggtcctaattcctaagtacaaggtcaaaacaaattcttcaatatttc |
19939619 |
T |
|
| Q |
118 |
tcctgttgatcaggacactcctaccttctttaacttacttggagactttggagaaaactatgatcatcatca |
189 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19939618 |
tcctgttaatcaggacactcctacattctttaaattacttggagactttggagaaaatcatgatcatcatca |
19939547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 19923824 - 19923663
Alignment:
| Q |
28 |
atcgatccatccatccatgactcctgtttctctgaatccaccaggtcctaattccttactacaaggtcaaaaccaattcttcaatatttctcctgttgat |
127 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
19923824 |
atcgatccatccatccatgtcttctgtttctctaaatccaccagatcttaattctttactacaaagtcaaaaccaattcttcaatatttctcctgttaat |
19923725 |
T |
|
| Q |
128 |
caggacactcctaccttctttaacttacttggagactttggagaaaactatgatcatcatca |
189 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19923724 |
aaggacactcctaccttctttaaattacttggagactttggagaaaatcatgatcatcatca |
19923663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 19923531 - 19923489
Alignment:
| Q |
294 |
tttttatcatgacacttatactaaactgtgtgtttgaatgaaa |
336 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
19923531 |
tttttatgatgacacttttactaaactgtttgtttgaatgaaa |
19923489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University