View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5961_high_30 (Length: 275)

Name: NF5961_high_30
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5961_high_30
NF5961_high_30
[»] chr6 (4 HSPs)
chr6 (162-257)||(8297253-8297349)
chr6 (59-104)||(8297148-8297193)
chr6 (6-103)||(12472198-12472296)
chr6 (6-85)||(31850978-31851058)
[»] chr5 (1 HSPs)
chr5 (6-85)||(6486030-6486109)
[»] chr4 (5 HSPs)
chr4 (6-85)||(6725301-6725380)
chr4 (17-85)||(11959865-11959933)
chr4 (6-85)||(6688908-6688987)
chr4 (6-76)||(6687652-6687722)
chr4 (31-76)||(21060311-21060356)
[»] chr1 (5 HSPs)
chr1 (6-85)||(12294910-12294989)
chr1 (13-85)||(52685739-52685811)
chr1 (13-85)||(52681609-52681681)
chr1 (21-85)||(10863004-10863068)
chr1 (36-85)||(52975879-52975928)
[»] chr2 (3 HSPs)
chr2 (6-85)||(31306615-31306694)
chr2 (39-85)||(6815997-6816043)
chr2 (36-84)||(30425686-30425734)
[»] chr8 (2 HSPs)
chr8 (13-85)||(36073783-36073855)
chr8 (13-85)||(36091135-36091207)
[»] chr3 (3 HSPs)
chr3 (13-85)||(33720771-33720843)
chr3 (31-85)||(33716655-33716709)
chr3 (20-85)||(36109845-36109910)
[»] chr7 (1 HSPs)
chr7 (6-94)||(18929912-18929998)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 8297253 - 8297349
Alignment:
Q  162 tttaacatggggtcacaacccgagttctgtatggggtagtatccatgtttcacatgtaatagtcagagca-gccttagatggagattggaagacggt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  8297253 tttaacatggggtcacaacccgagttctgtatggggtagtatccatgtttcacatgtaatagtcagaggaggccttagatggagattgggagacggt 8297349  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 8297148 - 8297193
Alignment:
Q  59 tataacagagaatacaaccaatcaactttttaatctctcgagtgac 104  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||    
T  8297148 tataactgagaatacaactaatcaactttttaatctctcgagtgac 8297193  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 12472296 - 12472198
Alignment:
Q  6 aaattattctataacttgagagt-agtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaactttttaatctctcgagtga 103  Q
    |||||| |||||||||| ||||| | ||||||||||||| ||  |||||||||||| |  |||||||||||| ||||||||  |||||||  |||||||    
T  12472296 aaattactctataactttagagttattttatttcaatgaaaaatgtgctccttttacaggagagaatacaactaatcaactccttaatctagcgagtga 12472198  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 31850978 - 31851058
Alignment:
Q  6 aaattattctataacttgagagtagtttatttcaatgataatggtgctcctttt-ataacagagaatacaaccaatcaact 85  Q
    |||||| ||||||| ||||||||| |||| |||||| | || ||| |||||||| |||  |||||||||||| ||||||||    
T  31850978 aaattactctataatttgagagtattttaattcaattagaagggtactccttttcatagaagagaatacaactaatcaact 31851058  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 6486109 - 6486030
Alignment:
Q  6 aaattattctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||| ||||||||    
T  6486109 aaattactctataacttgagagtagtttatttcaatgagaatggtactccttttataggagagaatacaactaatcaact 6486030  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 6725301 - 6725380
Alignment:
Q  6 aaattattctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||    
T  6725301 aaattactctataacttgggagttgtttatttcaatgagaatggtgctccttttataggagagaatacaactaatcaact 6725380  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 11959865 - 11959933
Alignment:
Q  17 taacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||| |||||| ||||||||||||| ||||||||||| ||||||  |||||||||||| ||||||||    
T  11959865 taacttaagagtattttatttcaatgaaaatggtgctccatttataggagagaatacaactaatcaact 11959933  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 6688987 - 6688908
Alignment:
Q  6 aaattattctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||| | |||||| ||||||| ||||||| |||||| |||| ||||||||||| |  | |||||||||| ||||||||    
T  6688987 aaattactttataacatgagagttgtttattccaatgagaatgatgctccttttacaggaaagaatacaactaatcaact 6688908  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 6687722 - 6687652
Alignment:
Q  6 aaattattctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaac 76  Q
    |||||||| |||||||| ||||| ||||||| |||||| |||  || ||||||||||  ||||||||||||    
T  6687722 aaattattttataacttaagagttgtttattccaatgagaataatggtccttttataggagagaatacaac 6687652  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 21060311 - 21060356
Alignment:
Q  31 tttatttcaatgataatggtgctccttttataacagagaatacaac 76  Q
    ||||||||||||| | ||||||||||||||||  ||||||||||||    
T  21060311 tttatttcaatgagagtggtgctccttttataggagagaatacaac 21060356  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 12294989 - 12294910
Alignment:
Q  6 aaattattctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||| |||||||||| |||||||||||||||||||  ||||||||||||||||||  |||||||||||| ||||||||    
T  12294989 aaattactctataacttaagagtagtttatttcaatgtgaatggtgctccttttataggagagaatacaactaatcaact 12294910  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 52685739 - 52685811
Alignment:
Q  13 tctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| |||  |||||||||||| ||||||||    
T  52685739 tctataacttgagagtaatttatttcaatgaaaatggtgctcctttaataggagagaatacaactaatcaact 52685811  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 52681609 - 52681681
Alignment:
Q  13 tctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||||  |||||||||||  ||||||||    
T  52681609 tctataactcgagagtaatttatttcaatgaaaatggtgctccttttataggagagaatacaattaatcaact 52681681  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 10863004 - 10863068
Alignment:
Q  21 ttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||||||  |||||||||||| ||||||||||||||||||  |||||||||||| ||||||||    
T  10863004 ttgagagtatattatttcaatgagaatggtgctccttttataggagagaatacaactaatcaact 10863068  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 52975879 - 52975928
Alignment:
Q  36 ttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||| | ||||||||||||||||||  |||||||||||| ||||||||    
T  52975879 ttcaataagaatggtgctccttttataggagagaatacaactaatcaact 52975928  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 31306694 - 31306615
Alignment:
Q  6 aaattattctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||| ||||||||| |||||| |||||||||||||| ||||||||||||||||||  ||||||| |||| ||||||||    
T  31306694 aaattactctataactagagagttgtttatttcaatgagaatggtgctccttttataggagagaatgcaactaatcaact 31306615  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 6815997 - 6816043
Alignment:
Q  39 aatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    ||||| ||||||||||||||||||  |||||||||||| ||||||||    
T  6815997 aatgagaatggtgctccttttataggagagaatacaactaatcaact 6816043  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 30425734 - 30425686
Alignment:
Q  36 ttcaatgataatggtgctccttttataacagagaatacaaccaatcaac 84  Q
    |||||| | ||||||||||||||||||  |||||||||||| |||||||    
T  30425734 ttcaataagaatggtgctccttttataggagagaatacaactaatcaac 30425686  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 36073783 - 36073855
Alignment:
Q  13 tctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||||||| |||||  ||||||||||||| |||||| |||||||||||  |||||||||||| ||||||||    
T  36073783 tctataacttcagagtgatttatttcaatgaaaatggttctccttttataggagagaatacaactaatcaact 36073855  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 36091135 - 36091207
Alignment:
Q  13 tctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||||||| |||||  ||||||||||||| |||||| |||||||||||  |||||||||||| ||||||||    
T  36091135 tctataacttcagagtgatttatttcaatgaaaatggttctccttttataggagagaatacaactaatcaact 36091207  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 33720843 - 33720771
Alignment:
Q  13 tctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    |||||||||| |||||  ||||||||||||| |||||| |||||||||||  |||||||||||  ||||||||    
T  33720843 tctataacttcagagtgatttatttcaatgaaaatggttctccttttatagaagagaatacaattaatcaact 33720771  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 33716709 - 33716655
Alignment:
Q  31 tttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    ||||||||||||| |||||| |||||||||||  |||||||||||| ||||||||    
T  33716709 tttatttcaatgaaaatggttctccttttataggagagaatacaactaatcaact 33716655  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 36109845 - 36109910
Alignment:
Q  20 cttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaact 85  Q
    ||||||||||  | |||||||||| ||||| ||||||||||||  |||||||||| | ||||||||    
T  36109845 cttgagagtatatcatttcaatgagaatggagctccttttataggagagaatacagctaatcaact 36109910  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 18929998 - 18929912
Alignment:
Q  6 aaattattctataacttgagagtagtttatttcaatgataatggtgctccttttataacagagaatacaaccaatcaactttttaatct 94  Q
    |||||| |||||||||| |||||  |||  |||||||| ||| ||||||||| ||||  |||||||||||| ||||||||  |||||||    
T  18929998 aaattactctataactttagagttattt--ttcaatgaaaattgtgctccttctatagaagagaatacaactaatcaactccttaatct 18929912  T

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