View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_5 (Length: 455)
Name: NF5961_high_5
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 1308025 - 1307581
Alignment:
| Q |
16 |
atggttgcaattttctttcttttttctatcattctaaatgccnnnnnnnntgataacaatactacaagtgaaccttactgtcactgtcac------atat |
109 |
Q |
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| T |
1308025 |
atggttgcatttttctttcttttttctatcattctaaatgccaaaaaaa-tgataacaatactacaagtgaaccttactgtcactgtcactgtcacatat |
1307927 |
T |
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| Q |
110 |
taaaggtagtacacaacccaatcaaacaatgttatgaattgtggtgcacaaaaaatagcggtttgttaaaactctgctacactgcaatgctatagtccta |
209 |
Q |
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| T |
1307926 |
taaaggtagtacacaacccaatcaaacaatgttatgaattgtggtgcacaaaaaatagcggtttgttaaaactctgctacactgcaatgctatagtccta |
1307827 |
T |
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| Q |
210 |
ctcctactatagccgttattcgacaacactttgtacaaaatcacataacaataatggttggtttaaattacgctacgctggagagtcactgtaagtcggc |
309 |
Q |
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| T |
1307826 |
ctcctactatagccgttattcgacaacactttgtacaaaatcacataacaataatggttggtttaaattacgctacgctgtagagtcactgtaagttggc |
1307727 |
T |
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| Q |
310 |
agttgctatttgacaactctgcaatcaagttcattaacattcaaaactaacaccaaaatcatgtgattctacgtgcataatgcacaaaatattaacctac |
409 |
Q |
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| T |
1307726 |
agttgctatttgacaactctgcaatcaagttcattaacattcaaaagtaacaccaaaatcatgtgattctacgtgcataatgcacaaaatattaacctac |
1307627 |
T |
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| Q |
410 |
acaatataaattatcaacaaataaacatctagaagtgaaatcaagt |
455 |
Q |
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| T |
1307626 |
acaatataaattatcaacaaataaacatctagaagtgaaatcaagt |
1307581 |
T |
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