View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_high_50 (Length: 246)
Name: NF5961_high_50
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_high_50 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 47035718 - 47035948
Alignment:
| Q |
16 |
atttcacccgaggagcatgaaggcgagtgaaaccttcaacacgaacctccttattcttccattgccacaaaaagtgacaagctatagtacattcaccaga |
115 |
Q |
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| T |
47035718 |
atttcacccgaggagcatgaaggcgagtgaaaccttcaacacaaacctccttattcttccattgccacaaaaagtgacaagctatggtacattcaccaga |
47035817 |
T |
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| Q |
116 |
ccacaaaattcacatattaatctcattgcgtttgcttaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacgg |
215 |
Q |
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| T |
47035818 |
ccacaaaattcacatattaatctcattgcgtttgctcaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacgg |
47035917 |
T |
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| Q |
216 |
agccaaatgcatctatatcgccctagctagc |
246 |
Q |
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| T |
47035918 |
agccaaatgcatctatatcgccctagctagc |
47035948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 36571801 - 36571596
Alignment:
| Q |
30 |
gcatgaaggcgagtgaaaccttcaacacgaacctccttattcttccattgccacaaaaagtgacaagctatagtacattcaccagaccac---aaaattc |
126 |
Q |
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|||||| | |||||||||||||||||| |||||| ||||||||| ||||| ||| ||||||||| ||||| ||| ||||||||||| | |||| |
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| T |
36571801 |
gcatgaggacgagtgaaaccttcaacatgaaccttcttattctttcattgttgcaatgagtgacaagttatagcccatacaccagaccacacaataattt |
36571702 |
T |
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| Q |
127 |
acatattaatctcattgcgtttgcttaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatgca |
226 |
Q |
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| T |
36571701 |
tcatactaacctcattcattttgttcaaatttaactcgaaccaatccttaaaatcac-ttctaaagaaagctttgcgatccttccatggaaccaaataca |
36571603 |
T |
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| Q |
227 |
tctatat |
233 |
Q |
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| T |
36571602 |
tccatat |
36571596 |
T |
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