View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5961_high_6 (Length: 453)

Name: NF5961_high_6
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5961_high_6
NF5961_high_6
[»] chr4 (9 HSPs)
chr4 (17-444)||(51148730-51149157)
chr4 (196-438)||(51159627-51159869)
chr4 (224-439)||(29934185-29934400)
chr4 (17-164)||(51159873-51160020)
chr4 (17-187)||(29934009-29934179)
chr4 (234-435)||(51202238-51202439)
chr4 (17-127)||(51202609-51202719)
chr4 (233-387)||(51215340-51215494)
chr4 (38-128)||(51216269-51216359)
[»] chr3 (4 HSPs)
chr3 (232-437)||(36288635-36288840)
chr3 (22-128)||(49734127-49734233)
chr3 (232-387)||(49734523-49734678)
chr3 (22-130)||(36288937-36289045)
[»] chr8 (1 HSPs)
chr8 (62-102)||(27727391-27727431)


Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 51149157 - 51148730
Alignment:
Q  17 aatagtatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcccccagataattgaattcctctctcacctactatcgtgtcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51149157 aatagtatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcccccagataattgaattcctctctcacctactatcgtgtcat 51149058  T
Q  117 agccctgcatatatagtatcatgttcaagagttcagactaatgtatgtgcgtatgtttcaattttaaagatgtatcttagttgcatagcatttaagagag 216  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51149057 agccctacatatatagtatcatgttcaagagttcagactaatgtatgtgcgtatgtttcaattttaaagatgtatcttagttgcatagcatttaagagag 51148958  T
Q  217 gttggattgaaaggaatttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51148957 gttggattgaaaggaatttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcct 51148858  T
Q  317 ccttttccgtatgcaatattcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccatctgttgtcttagccatttcacttgcatcc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51148857 ccttttccgtatgcaatattcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccatctgttgtcttagccatttcacttgcatcc 51148758  T
Q  417 tttgaatttctattccatcaagaataat 444  Q
    ||||||||||||||||||||||| ||||    
T  51148757 tttgaatttctattccatcaagagtaat 51148730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 196 - 438
Target Start/End: Complemental strand, 51159869 - 51159627
Alignment:
Q  196 gttgcatagcatttaagagaggttggattgaaaggaatttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatt 295  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51159869 gttgcaaagcatttaagagaggttggattgaaaggaatttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatt 51159770  T
Q  296 tctgcctctgttgcatctcctccttttccgtatgcaatattcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccatctgttgtc 395  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51159769 tctgcctctgttgcatctcctccttttccgtatgcaatattggctcgaaccgtgtcattgaaaagaacaggctcttggcttaccagtcccatctgttgtc 51159670  T
Q  396 ttagccatttcacttgcatcctttgaatttctattccatcaag 438  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  51159669 ttagccatttcacctgcatcctttgaatttctattccatcaag 51159627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 224 - 439
Target Start/End: Original strand, 29934185 - 29934400
Alignment:
Q  224 tgaaaggaatttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcctccttttc 323  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  29934185 tgaaaggaatttaccttctgcaaactactaatgaactggtgagcatttgctagttctgccgcggctacaatttctgcttctgttgcatctcctccttttc 29934284  T
Q  324 cgtatgcaatattcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccatctgttgtcttagccatttcacttgcatcctttgaat 423  Q
    ||||||||||||| || || || |||||||||||||||| ||||||||||||||| || ||||| |||||||| |||||||||| ||| | |||||||||    
T  29934285 cgtatgcaatattggctcggactgtgtcattgaaaagaacaggctcttggcttactagccccatttgttgtctcagccatttcagttgaagcctttgaat 29934384  T
Q  424 ttctattccatcaaga 439  Q
    |||| |||||||||||    
T  29934385 ttcttttccatcaaga 29934400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 51160020 - 51159873
Alignment:
Q  17 aatagtatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcccccagataattgaattcctctctcacctactatcgtgtcat 116  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51160020 aatagtatttttggattcttcactatagctcgtgcaattgccacacgctgcttctgtcccccggataattgaattcctctctcacctactatcgtgtcat 51159921  T
Q  117 agccctgcatatatagtatcatgttcaagagttcagactaatgtatgt 164  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||    
T  51159920 agccctgcatatatagtatcatgttcaagatttcagacctatgtatgt 51159873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 29934009 - 29934179
Alignment:
Q  17 aatagtatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcccccagataattgaattcctctctcacctactatcgtgtcat 116  Q
    ||||||||||| ||||||||||| |  ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29934009 aatagtattttcggattcttcaccaacgctcttgcaattgccacccgctgcttctgtcccccggataattgaattcctctctcgcctactatcgtgtcat 29934108  T
Q  117 agccctgcatatatagtatcatgttcaagagttcagactaatgtatgtgcgtatgtttcaattttaaagat 187  Q
    |||||||||||||||||| |||| |||||| ||  |||  ||||||||  |||||||||||||||||||||    
T  29934109 agccctgcatatatagtaccatgctcaagattttggacctatgtatgtatgtatgtttcaattttaaagat 29934179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 234 - 435
Target Start/End: Complemental strand, 51202439 - 51202238
Alignment:
Q  234 ttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcctccttttccgtatgcaat 333  Q
    ||||||| |||||||||| ||| |||| |||||||||||||| |||||| ||||||| ||| |||||||||| ||||||||||||||| || ||||||||    
T  51202439 ttaccttttgcaaactactaataaacttgtgagcatttgctaattctgctgcagctataatctctgcctctgatgcatctcctcctttaccatatgcaat 51202340  T
Q  334 attcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccatctgttgtcttagccatttcacttgcatcctttgaatttctattcca 433  Q
    ||| || |  |  |||||||| || || | |||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||| |||||| |||||    
T  51202339 attggctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgttgtcttagccatttcacttgaagactttggatttcttttcca 51202240  T
Q  434 tc 435  Q
    ||    
T  51202239 tc 51202238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 51202719 - 51202609
Alignment:
Q  17 aatagtatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcccccagataattgaattcctctctcacctactatcgtgtcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  || ||||    
T  51202719 aatagtatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcccccagataattgaactcctctctctcctactactgtatcat 51202620  T
Q  117 agccctgcata 127  Q
    | |||||||||    
T  51202619 aaccctgcata 51202609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 387
Target Start/End: Complemental strand, 51215494 - 51215340
Alignment:
Q  233 tttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcctccttttccgtatgcaa 332  Q
    ||||||| ||||||||||| |||||| |  |||||||||||||||||||| ||||||| || ||| ||||| |||||||  || |||||||| || ||||    
T  51215494 tttacctgctgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccataggcaa 51215395  T
Q  333 tattcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccat 387  Q
    | || || |  |  |||||||| || || | ||||||||||||||||||||||||    
T  51215394 tgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccat 51215340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 51216359 - 51216269
Alignment:
Q  38 actatagctctcgcaattgccacacgctgcttctgtcccccagataattgaattcctctctcacctactatcgtgtcatagccctgcatat 128  Q
    ||||| ||||| |||||||||||||| ||||||||||| ||||| | |||||| |||| ||| |||||||| || ||||| ||||||||||    
T  51216359 actatggctcttgcaattgccacacgttgcttctgtcctccagaaagttgaatccctcgctctcctactattgtatcatacccctgcatat 51216269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 437
Target Start/End: Complemental strand, 36288840 - 36288635
Alignment:
Q  232 atttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcctccttttccgtatgca 331  Q
    |||||||| ||||||||||| |||||||| |||||||||||| | || ||| ||||| |  || ||||| ||||||||||||  ||| ||||| |||||     
T  36288840 atttacctgctgcaaactactaatgaacttgtgagcatttgccatttttgctgcagcaatgatctctgcttctgttgcatcttttccctttccatatgcg 36288741  T
Q  332 atattcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccatctgttgtcttagccatttcacttgcatcctttgaatttctattc 431  Q
    ||||| || || ||||||||||| || |  | |||||||||||||||||  ||||| | ||| |||| |||||| || || | | |||| ||||||||||    
T  36288740 atattagctcgtaccgtgtcattaaacaacacaggctcttggcttaccaagcccattttttgccttaaccatttaacctgaagcttttggatttctattc 36288641  T
Q  432 catcaa 437  Q
    ||||||    
T  36288640 catcaa 36288635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 49734127 - 49734233
Alignment:
Q  22 tatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcccccagataattgaattcctctctcacctactatcgtgtcatagccc 121  Q
    |||| |||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| | ||| || |||||||| |||||||| |||||||| |||    
T  49734127 tattcttggattcttaactatggctcttgcaattgccacacgttgcttctgtcctccagaaagttgtatccctctctcccctactattgtgtcatacccc 49734226  T
Q  122 tgcatat 128  Q
    |||||||    
T  49734227 tgcatat 49734233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 387
Target Start/End: Original strand, 49734523 - 49734678
Alignment:
Q  232 atttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcctccttttccgtatgca 331  Q
    |||||||| ||||||||| | ||||||||  ||||||||||| |||| ||| ||||||| |||||| ||||| |||||||  || |||||||| || |||    
T  49734523 atttacctgctgcaaactgctaatgaacttatgagcatttgcaagttttgctgcagctataatttcagcctcagttgcattgccaccttttccatacgca 49734622  T
Q  332 atattcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccat 387  Q
    || || || || || ||||||||||| || | |||||| ||| ||||||| |||||    
T  49734623 atgttggctcgcacggtgtcattgaacagcacaggctcctgggttaccaggcccat 49734678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 36289045 - 36288937
Alignment:
Q  22 tatttttggattcttcactatagctctcgcaattgccacacgctgcttctgtcccccagataat-tgaattcctctctcacctactatcgtgtcatagcc 120  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| || |||||| || | ||||| ||| || || |  |||||||||||    
T  36289045 tatttttggattcttcaatattgctcttgcaattgccacacgctgcttctgtccacccgataatctgga-tcctcgctcccccacaacggtgtcatagcc 36288947  T
Q  121 ctgcatatat 130  Q
    ||||||||||    
T  36288946 ctgcatatat 36288937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 27727431 - 27727391
Alignment:
Q  62 cgctgcttctgtcccccagataattgaattcctctctcacc 102  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  27727431 cgctgcttttgtcccccagataattgtattcctctctcacc 27727391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University