View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5961_low_1 (Length: 578)

Name: NF5961_low_1
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5961_low_1
NF5961_low_1
[»] chr5 (4 HSPs)
chr5 (8-240)||(43130888-43131126)
chr5 (409-562)||(43130584-43130738)
chr5 (8-103)||(1687771-1687866)
chr5 (305-371)||(43130773-43130839)
[»] chr1 (3 HSPs)
chr1 (8-216)||(48212899-48213107)
chr1 (8-103)||(52040100-52040195)
chr1 (9-103)||(13620514-13620608)
[»] chr4 (1 HSPs)
chr4 (8-115)||(13676713-13676820)
[»] chr7 (1 HSPs)
chr7 (9-103)||(21891682-21891776)
[»] chr6 (1 HSPs)
chr6 (8-115)||(19963898-19964005)
[»] chr3 (2 HSPs)
chr3 (8-103)||(41048593-41048688)
chr3 (9-115)||(44197430-44197537)
[»] chr8 (1 HSPs)
chr8 (12-103)||(27260189-27260280)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 43131126 - 43130888
Alignment:
Q  8 catcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaac------caagatttttt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||    
T  43131126 catcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaacacaaaccaagatttttt 43131027  T
Q  102 attgtaataatcacttttatccttagaatcaaattatccatcaaagaaacatagtaaggtagaagaaaatatccatattcaagaagagaaactgaaaaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131026 attgtaataatcacttttatccttagaatcaaattatccatcaaagaaacatagtaaggtagaagaaaatatccatattcaagaagagaaactgaaaaaa 43130927  T
Q  202 tacaccaccaatccattagatagagaaagaaataattag 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43130926 tacaccaccaatccattagatagagaaagaaataattag 43130888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 409 - 562
Target Start/End: Complemental strand, 43130738 - 43130584
Alignment:
Q  409 taaggtgacacttttctatgtcttaaagcaactgnnnnnnnnnn-tagagtactatactactgttggttggtttaattctccaatgaaattggaagattc 507  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43130738 taaggtgacacttttctatgtcttaaagcaactgaaaaaaaaatatagagtactatactactgttggttggtttaattctccaatgaaattggaagattc 43130639  T
Q  508 cacggtggaatattaattattattatgaccatggattaaaggagaatgttccctt 562  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43130638 cacggtggaatattaattattattatgaccatggtttaaaggagaatgttccctt 43130584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 1687771 - 1687866
Alignment:
Q  8 catcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1687771 catcatcatcatcaaccctgttaattccagaagttccttcaccatcttttcctctactattactccccatcataaacacaaaccaagattttttat 1687866  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 43130839 - 43130773
Alignment:
Q  305 ctttgaaagcaaaccaggaattgacttaaggtagcagagtgacattgttgttatagaaacaacaaag 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43130839 ctttgaaagcaaaccaggaattgacttaaggtagcagagtgacattgttgttatagaaacaacaaag 43130773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 48212899 - 48213107
Alignment:
Q  8 catcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttattgta 107  Q
    |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||    
T  48212899 catcatcatcataaaccctgttaatcccagaagttccttcaccatcttttcctctactattactccccatcataaacacaaaccaagaatttttatagta 48212998  T
Q  108 ataatcacttttatccttagaatcaaattatccatcaaagaaacatagtaaggtagaagaaaatatccatattcaagaagagaaactgaaaaaatacacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  48212999 ataatcacttttatccttagaatcaaattatccatcaaagaaacaaagtaagctagaagaaaatatccatattcaagaagtgaaactgaaaaaagacacc 48213098  T
Q  208 accaatcca 216  Q
    |||||||||    
T  48213099 accaatcca 48213107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 52040100 - 52040195
Alignment:
Q  8 catcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52040100 catcatcatcatcaaccctgttaattccagaagttccttcaccatcttttcctctactattactccccatcataaacacaaaccaagattttttat 52040195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 13620608 - 13620514
Alignment:
Q  9 atcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttat 103  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  13620608 atcatcatcatcaaccctgttaattccagaagttccttcaccatcttttcctctactattaccccccatcataaacacaaaccaagattttttat 13620514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 13676713 - 13676820
Alignment:
Q  8 catcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttattgta 107  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||     
T  13676713 catcatcatcattaaccttgttaattccagaagttccttcaccatcttttcctctactattactccccatcataaacacaaaccaagattttttatagtg 13676812  T
Q  108 ataatcac 115  Q
    ||||||||    
T  13676813 ataatcac 13676820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 21891682 - 21891776
Alignment:
Q  9 atcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttat 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21891682 atcatcatcatcaaccctgttaattccagaagttccttcaccatcttttcctctactattactccccatcataaacacaaaccaagattttttat 21891776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 19964005 - 19963898
Alignment:
Q  8 catcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttattgta 107  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||     
T  19964005 catcatcatcattaaccctgttaattccagaagttccttcaccattttttcctctactattactccccatcataaacacaaaccaagattttttatagtg 19963906  T
Q  108 ataatcac 115  Q
    ||||||||    
T  19963905 ataatcac 19963898  T

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Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 41048688 - 41048593
Alignment:
Q  8 catcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  41048688 catcatcatcatcaaccctgttaattccagaagttccttcaccatcttttcctctactattactccccatcataaacacacaccaagattttttat 41048593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 44197430 - 44197537
Alignment:
Q  9 atcatcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaag-attttttattgta 107  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||     
T  44197430 atcatcatcattaaccctgttaattccagaagttccttcaccatcttttcctctactattactccccatcataaacacaaaccaagaattttttatagtg 44197529  T
Q  108 ataatcac 115  Q
    ||||||||    
T  44197530 ataatcac 44197537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 27260189 - 27260280
Alignment:
Q  12 atcatcatcaaccgtgttaattccagaagttccttcaccatcttttcctctactattactccccatcacaaacacaaaccaagattttttat 103  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27260189 atcatcatcaaccctgttaattccagaagttccttcgccatcttttcctctactattactccccatcataaacacaaaccaagattttttat 27260280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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