View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_11 (Length: 423)
Name: NF5961_low_11
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 6359038 - 6359447
Alignment:
| Q |
1 |
tcttaccctttctgtatattctttgatccatgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcagattatcaag |
100 |
Q |
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| T |
6359038 |
tcttaccctttctgtatattctttgatccatgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcagattatcaag |
6359137 |
T |
|
| Q |
101 |
aagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacattttgaatttaagctcgtccttgtaattctctctat |
200 |
Q |
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| T |
6359138 |
aagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacgttttgaatttaagctcgtccttgtaattctctctat |
6359237 |
T |
|
| Q |
201 |
ctactactgttattatttcgttattaaatatattgtttgataccttcaagctttacagaaatctcgatccaataacctaatcccttcgtttttccactca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359238 |
ttactactgttattatttcgttattaaatatattgtttgataccttcaagcattacagaaatctcgatccaataacctaatcccttcgtttttccactca |
6359337 |
T |
|
| Q |
301 |
taatcattgtacatcagctgcctccaacaacaccagcagcaataccttcgttgttggcaccatcattgtgattgtcatcagcacacaccagtcactcaaa |
400 |
Q |
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| T |
6359338 |
taatcgttgtacatcagctgcctccaacaacaccagcagcaataccttcgttgttggcaccatcattgtgattgtcatcagcacacaccagtcactcaaa |
6359437 |
T |
|
| Q |
401 |
ttcacgagta |
410 |
Q |
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| T |
6359438 |
ttcacaagta |
6359447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 32857393 - 32857285
Alignment:
| Q |
31 |
tgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgaga |
130 |
Q |
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|||||||||||||||||||| | |||||| || ||||||||| |||||||| |||||| ||||| ||| |||||||| ||||| |||||| |||||||| |
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| T |
32857393 |
tgtacaaatgaaattgatttgctgtttatatccatgaagtcaaatccttgactatatgtagattctcatgaagctatttccatccataaaatgattgaga |
32857294 |
T |
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| Q |
131 |
aactgcaaa |
139 |
Q |
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||||||||| |
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| T |
32857293 |
aactgcaaa |
32857285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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