View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_14 (Length: 344)
Name: NF5961_low_14
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 31369669 - 31369974
Alignment:
| Q |
20 |
aatagtaccatcgtgtgctacatcaaccccatctgttaatttgaattttaagccatcaatctcagtcacaagaacttcaatctccttttctcttgttact |
119 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31369669 |
aatagtaccatcatgtgcgacatcaaccccatctgttaatttgaattgtaagccgtcaatctcagtcacaagaacttcaatctccttttctcttgttact |
31369768 |
T |
|
| Q |
120 |
ctcagcagtccctgtatcatattattaattaattagatgagtgaatgatagtgtaacttgtcacaatttaatccaaggatttttaacacgagagaaagaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31369769 |
ctcagcagtccctgtatcatattattaattaattagatgagtgaatgataatgtaacttgtcacaatttaatccaaggatttttaacacgagagaaagaa |
31369868 |
T |
|
| Q |
220 |
aagaatctacaaaaacataggatatttgatcaatacacaatcatattttggctaatcatacatgaggtattttatatctacaaatacctatataacatgt |
319 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31369869 |
aagaatctacaaaaacgtaggaaatttgatcaatacacaatcatattttggctaatcatacatgaggtattttatatctacaaatacctatataacatgt |
31369968 |
T |
|
| Q |
320 |
tttaat |
325 |
Q |
| |
|
|||||| |
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|
| T |
31369969 |
tttaat |
31369974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 31381880 - 31382148
Alignment:
| Q |
20 |
aatagtaccatcgtgtgctacatcaaccccatctgttaatttgaattttaagccatcaatctcagtcacaagaacttcaatctccttttctcttgttact |
119 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
31381880 |
aatagtaccatcatgtgctacatcaaccccatctattactttgaattttaagccatcaatctcagtcacaagtacttcaatctctttttctcttgttact |
31381979 |
T |
|
| Q |
120 |
ctcagcagtccctgtatcatattattaattaattagatgagtgaatgatagtgtaacttgtcacaatttaatccaaggatttttaacacgagagaaagaa |
219 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
31381980 |
ctcagcagtccctgtagcatatcattaattaattagatgagtgaatgataatataacttgtcacaatttaatccaagga--tttaacac--gagaaagaa |
31382075 |
T |
|
| Q |
220 |
aagaatctacaaaaacataggatatttgatcaatacacaatcatattttggctaatcatacatgaggtatttt |
292 |
Q |
| |
|
|| |||||| || ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
31382076 |
aataatctataagaacataggaaatttgatcaatcgacaatcatattttgactaatcatacatgaggtatttt |
31382148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 31403891 - 31404042
Alignment:
| Q |
20 |
aatagtaccatcgtgtgctacatcaaccccatctgttaatttgaattttaagccatcaatctcagtcacaagaacttcaatctccttttctcttgttact |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
31403891 |
aatagtaccatcatgtgctacatcaaccccatctgttaatttgaattttaagccatcaatctcagtcacaagtacttcaatctctttttctcttgttact |
31403990 |
T |
|
| Q |
120 |
ctcagcagtccctgtatcata----ttattaattaattagatgagtgaatga |
167 |
Q |
| |
|
||||||| |||||| |||||| | ||||||||||||||||||||||||| |
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|
| T |
31403991 |
ctcagcaatccctgaatcataccattaattaattaattagatgagtgaatga |
31404042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 31404086 - 31404201
Alignment:
| Q |
163 |
aatgatagtgtaacttgtcacaatttaatccaaggatttttaacacgagagaaagaaaagaatctacaaaaacataggatatttgatcaatacacaatca |
262 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| ||||| || |
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| T |
31404086 |
aatgataatgcaacttgtcacaatttaatccaagga--tttaacac--gagaaagaaaagaatctgtaaaaacat----------atcaattcacaaaca |
31404171 |
T |
|
| Q |
263 |
tattttggctaatcatacatgaggtatttt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
31404172 |
tattttggctaatcatacatgaggtatttt |
31404201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 31420279 - 31420319
Alignment:
| Q |
37 |
ctacatcaaccccatctgttaatttgaattttaagccatca |
77 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
31420279 |
ctacatcaaccccatctgttaacttgaattttaatccatca |
31420319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 323
Target Start/End: Original strand, 31384527 - 31384558
Alignment:
| Q |
292 |
tatatctacaaatacctatataacatgtttta |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
31384527 |
tatatctacaaatacctatataacatgtttta |
31384558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 33620871 - 33621021
Alignment:
| Q |
20 |
aatagtaccatcgtgtgctacatcaaccccatctgttaatttgaattttaagccatcaatctcagtcacaagaacttcaatctccttttctcttgttact |
119 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
33620871 |
aatagtaccatcatgtgcaacatcaaccc-atctgttaatttgaattttaagccatcaatctcagtcacaagtacttcaatctctttttctcttgttact |
33620969 |
T |
|
| Q |
120 |
ctcagcagtccctgtatcata----ttattaattaattagatgagtgaatga |
167 |
Q |
| |
|
||||||| |||||| |||||| | ||||||||||||||||||||||||| |
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|
| T |
33620970 |
ctcagcaatccctgaatcataccattaattaattaattagatgagtgaatga |
33621021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 33621065 - 33621180
Alignment:
| Q |
163 |
aatgatagtgtaacttgtcacaatttaatccaaggatttttaacacgagagaaagaaaagaatctacaaaaacataggatatttgatcaatacacaatca |
262 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| ||||| || |
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|
| T |
33621065 |
aatgataatgcaacttgtcacaatttaatccaagga--tttaacac--gagaaagaaaagaatctgtaaaaacat----------atcaattcacaaaca |
33621150 |
T |
|
| Q |
263 |
tattttggctaatcatacatgaggtatttt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
33621151 |
tattttggctaatcatacatgaggtatttt |
33621180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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