View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5961_low_18 (Length: 302)

Name: NF5961_low_18
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5961_low_18
NF5961_low_18
[»] chr4 (11 HSPs)
chr4 (196-294)||(37732690-37732788)
chr4 (78-181)||(37732069-37732171)
chr4 (65-142)||(46309010-46309088)
chr4 (78-144)||(30250183-30250249)
chr4 (65-141)||(1987601-1987678)
chr4 (83-141)||(26442276-26442334)
chr4 (90-141)||(46686357-46686408)
chr4 (65-140)||(9827874-9827950)
chr4 (78-138)||(34538050-34538110)
chr4 (78-139)||(6093495-6093556)
chr4 (101-142)||(55960843-55960884)
[»] chr1 (13 HSPs)
chr1 (65-142)||(46903576-46903654)
chr1 (61-142)||(40053008-40053090)
chr1 (65-144)||(644802-644882)
chr1 (65-139)||(28457237-28457312)
chr1 (104-149)||(11038402-11038447)
chr1 (65-141)||(27787595-27787672)
chr1 (61-141)||(49615163-49615244)
chr1 (79-142)||(24158771-24158834)
chr1 (79-141)||(2827598-2827660)
chr1 (79-141)||(21446106-21446168)
chr1 (79-143)||(37741838-37741902)
chr1 (90-141)||(44714375-44714426)
chr1 (78-142)||(43757706-43757770)
[»] chr5 (9 HSPs)
chr5 (61-149)||(8761749-8761838)
chr5 (65-141)||(3518289-3518366)
chr5 (79-141)||(35358823-35358885)
chr5 (65-142)||(1108104-1108186)
chr5 (65-141)||(10469835-10469912)
chr5 (65-143)||(29765937-29766016)
chr5 (79-139)||(34698897-34698956)
chr5 (65-140)||(12612906-12612982)
chr5 (65-140)||(31625965-31626041)
[»] chr8 (5 HSPs)
chr8 (65-142)||(45405722-45405800)
chr8 (65-142)||(5742544-5742622)
chr8 (65-141)||(28156309-28156386)
chr8 (90-142)||(32674119-32674171)
chr8 (79-139)||(38939082-38939142)
[»] chr7 (8 HSPs)
chr7 (65-142)||(2600421-2600499)
chr7 (65-141)||(37970039-37970116)
chr7 (79-144)||(384672-384737)
chr7 (65-141)||(640498-640575)
chr7 (65-142)||(11070334-11070412)
chr7 (79-137)||(28548127-28548185)
chr7 (107-144)||(27383811-27383848)
chr7 (101-141)||(27943100-27943140)
[»] chr2 (13 HSPs)
chr2 (65-142)||(38724204-38724282)
chr2 (79-142)||(40721892-40721955)
chr2 (78-144)||(24727522-24727588)
chr2 (65-142)||(34373114-34373192)
chr2 (65-142)||(304879-304957)
chr2 (61-149)||(27328988-27329078)
chr2 (79-141)||(43026057-43026119)
chr2 (65-141)||(1151635-1151712)
chr2 (79-140)||(9377647-9377708)
chr2 (65-140)||(4858219-4858295)
chr2 (65-141)||(11728009-11728086)
chr2 (62-137)||(37827677-37827753)
chr2 (61-137)||(13850076-13850153)
[»] chr3 (11 HSPs)
chr3 (65-143)||(50025571-50025650)
chr3 (65-142)||(2280283-2280361)
chr3 (79-143)||(14847404-14847468)
chr3 (65-140)||(29533867-29533943)
chr3 (78-141)||(16295584-16295647)
chr3 (101-142)||(3210563-3210604)
chr3 (79-144)||(38471763-38471828)
chr3 (82-144)||(10565176-10565237)
chr3 (82-140)||(25806413-25806471)
chr3 (82-139)||(33074997-33075054)
chr3 (98-142)||(52381243-52381287)
[»] chr6 (1 HSPs)
chr6 (66-142)||(34976723-34976800)
[»] scaffold0036 (1 HSPs)
scaffold0036 (78-138)||(54553-54613)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 37732690 - 37732788
Alignment:
Q  196 acatagttttgatccttttgtcatatttttcaacttagaattggtcaatgtgaaatattttaaatgagccgtcatacgatccaatgatgtagaattatc 294  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37732690 acataattttgatccttttgtcatatttttcaacttagaattggtcaatgtgaaatattttaaatgagccgtcatacgatccaatgatgtagaattatc 37732788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 37732069 - 37732171
Alignment:
Q  78 aaagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactctaagaaaagtgttttagtatgactcatgctcactaa 177  Q
    ||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37732069 aaagagagaacaataaagttgtttcaaagattgtaccgaaatggttgttaaaatatcactactctaagaaaagtg-tttagtatgactcatgctcactaa 37732167  T
Q  178 taag 181  Q
    ||||    
T  37732168 taag 37732171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 46309088 - 46309010
Alignment:
Q  65 tttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||||| |||||||| ||||||| || |||||||||||||| |||||||||| ||||||||||||||||    
T  46309088 tttttgaccaatgaaaagagagaactacaaagttgtctcaaaggttgtaccaaaatggttgtcaaaatatcactactct 46309010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 30250249 - 30250183
Alignment:
Q  78 aaagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactctaa 144  Q
    ||||||||||| ||||||| || |||||||||||||| ||||| || ||||||||||||||||||||    
T  30250249 aaagagagaacaacaaagttgtctcaaaggttgtaccaaaatgatttttaaaatatcactactctaa 30250183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 1987678 - 1987601
Alignment:
Q  65 tttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||||| |||||||| ||||||| || |||||||||||||| ||||| |||| |||||||||||||||    
T  1987678 tttttgaccaatgaaaagagagaacaacaaagttgtctcaaaggttgtaccaaaatgattgtcaaaatatcactactc 1987601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 26442334 - 26442276
Alignment:
Q  83 gagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||| ||||||| || |||||||||||||| |||| |||||||||||||||||||||    
T  26442334 gagaacaacaaagttgtctcaaaggttgtaccaaaattgttgttaaaatatcactactc 26442276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 46686357 - 46686408
Alignment:
Q  90 acaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    ||||||| || |||||||||||||| |||||||||| |||||||||||||||    
T  46686357 acaaagttgtatcaaaggttgtaccaaaatggttgtcaaaatatcactactc 46686408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 9827950 - 9827874
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactact 140  Q
    |||||||| ||||| |||||| ||| ||||||| || ||||||||| |||| ||||| |||| ||||||||||||||    
T  9827950 tttttgaccaatgagaagagataacaacaaagttgtctcaaaggttataccaaaatgattgtcaaaatatcactact 9827874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 34538050 - 34538110
Alignment:
Q  78 aaagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcacta 138  Q
    ||||| ||||| ||||||| || |||||||||||||| |||| ||||| ||||||||||||    
T  34538050 aaagatagaacaacaaagttgtctcaaaggttgtaccaaaatagttgtcaaaatatcacta 34538110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 6093556 - 6093495
Alignment:
Q  78 aaagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactac 139  Q
    ||||||||||| ||||| | || |||||| || |||| |||| |||||||||||||||||||    
T  6093556 aaagagagaacaacaaaattgtctcaaagattataccaaaatagttgttaaaatatcactac 6093495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 55960843 - 55960884
Alignment:
Q  101 tcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||| ||||| | |||||||||||||||||||||||||||    
T  55960843 tcaaagattgtatcaaaatggttgttaaaatatcactactct 55960884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 46903576 - 46903654
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||| |||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||    
T  46903576 tttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgttaaaatatcactactct 46903654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 40053008 - 40053090
Alignment:
Q  61 attatttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||||||| ||||||| |||||||| ||||||| || |||||| ||||||| |||| ||||||||||||||||||||||    
T  40053008 attatttttgaccaatgaaaagagagaacaacaaagttgtctcaaagattgtaccaaaatagttgttaaaatatcactactct 40053090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 644802 - 644882
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactctaa 144  Q
    |||||||||||||| |||||||||| | ||||| || ||||| |||||||| |||||||||| ||||||||||||||||||    
T  644802 tttttgactaatgagaagagagaacaataaagttgtctcaaatgttgtaccaaaatggttgtcaaaatatcactactctaa 644882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 28457312 - 28457237
Alignment:
Q  65 tttttgactaatgaaag-agagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactac 139  Q
    |||||||| |||||||  ||||||| | ||||| || |||||||||||||| ||||||||||||||||||||||||    
T  28457312 tttttgaccaatgaaaatagagaacaataaagttgtctcaaaggttgtaccaaaatggttgttaaaatatcactac 28457237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 11038402 - 11038447
Alignment:
Q  104 aaggttgtaccgaaatggttgttaaaatatcactactctaagaaaa 149  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  11038402 aaggttgtaccaaaatggttgttaaaatatcactactctaaaaaaa 11038447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 27787595 - 27787672
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||| |||||||||| ||||||| || ||||| |||||||| |||||||||| ||| |||||||||||    
T  27787595 tttttgacaaatgagaagagagaacaacaaagttgtctcaaaagttgtaccaaaatggttgtcaaactatcactactc 27787672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 49615244 - 49615163
Alignment:
Q  61 attatttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||||||| ||||| || ||||||| | ||||| || |||||| ||||||| |||||||||| |||||||||||||||    
T  49615244 attatttttgaccaatgagaaaagagaacaataaagttgtctcaaagattgtaccaaaatggttgtcaaaatatcactactc 49615163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 24158771 - 24158834
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||| ||||| ||||||| || ||||||||||| || |||||||||| ||||||||||||||||    
T  24158771 aagacagaacaacaaagttgtctcaaaggttgttcctaaatggttgtcaaaatatcactactct 24158834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 2827660 - 2827598
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||||| ||||| | || |||||||||||||| |||||||| | |||||||||||||||    
T  2827660 aagagagaacaacaaaattgtctcaaaggttgtaccaaaatggttatcaaaatatcactactc 2827598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 21446168 - 21446106
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| | ||||||| || |||||||||||||| |||||||| | |||||||||||||||    
T  21446168 aagagagatcaacaaagttgtctcaaaggttgtaccaaaatggttatcaaaatatcactactc 21446106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 37741902 - 37741838
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactcta 143  Q
    |||||||||| ||||||| || |||||  ||||| | |||||||||| |||||||||||||||||    
T  37741902 aagagagaacaacaaagttgtctcaaaaattgtatcaaaatggttgtcaaaatatcactactcta 37741838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 44714375 - 44714426
Alignment:
Q  90 acaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    ||||||| || |||||||||||||| ||||| |||||||||||| |||||||    
T  44714375 acaaagttgtctcaaaggttgtaccaaaatgattgttaaaatattactactc 44714426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 43757706 - 43757770
Alignment:
Q  78 aaagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    ||||||||||| ||||||| || |||||  || |||| |||| ||||| ||||||||||||||||    
T  43757706 aaagagagaacaacaaagttgtctcaaaaattataccaaaatagttgtcaaaatatcactactct 43757770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 8761749 - 8761838
Alignment:
Q  61 attatttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactctaagaaaa 149  Q
    |||||||||||| ||||||| |||||||| ||||||| || |||||||||||||| ||||||||||||| ||||||||| ||||| ||||    
T  8761749 attatttttgaccaatgaaaagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgttaacatatcactattctaaaaaaa 8761838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 3518289 - 3518366
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||| |||||||||| ||||||| || |||||||||||||| |||||||||| |||||||||||||||    
T  3518289 tttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgtcaaaatatcactactc 3518366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 35358885 - 35358823
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||||| ||||||| || |||||||||||||| ||||||||| ||||||||||||||||    
T  35358885 aagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgctaaaatatcactactc 35358823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 1108104 - 1108186
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagttt----caaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||| |||||||||| ||||||| ||||    ||||||||||||| |||||||||| ||||||||||||||||    
T  1108104 tttttgaccaatgagaagagagaacaacaaagttgtttgtctcaaaggttgtaccaaaatggttgtcaaaatatcactactct 1108186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 10469912 - 10469835
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||| |||||||||| ||||||| || |||||| ||||||| ||||| |||| |||||||||||||||    
T  10469912 tttttgaccaatgagaagagagaacaacaaagttgtctcaaagattgtaccaaaatgattgtcaaaatatcactactc 10469835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 29765937 - 29766016
Alignment:
Q  65 tttttgactaatgaa-agagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactcta 143  Q
    |||||||| |||||| | ||||||| |||||||  | |||||||||||||| |||| ||||| |||||||||||||||||    
T  29765937 tttttgaccaatgaataaagagaacaacaaagttatctcaaaggttgtaccaaaatagttgtcaaaatatcactactcta 29766016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 34698897 - 34698956
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactac 139  Q
    |||||| ||| ||||||| ||||||||| ||||||| ||||| ||||||||||||||||||    
T  34698897 aagagaaaacaacaaagttgtttcaaag-ttgtaccaaaatgattgttaaaatatcactac 34698956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 12612982 - 12612906
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactact 140  Q
    |||||||| ||||| |||||||||| |||| || ||  |||| |||||||| ||||||||||| |||||||| ||||    
T  12612982 tttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaatggttgttcaaatatcattact 12612906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 31626041 - 31625965
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactact 140  Q
    |||||||| ||||| |||||||||| | ||||| || | ||| |||||||  |||||||||| ||||||||||||||    
T  31626041 tttttgaccaatgagaagagagaacaataaagttgtcttaaaagttgtactaaaatggttgtcaaaatatcactact 31625965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 45405800 - 45405722
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||| |||||||||| | ||||| || |||||||||||||| |||||||||||||||||||||||||||    
T  45405800 tttttgaccaatgagaagagagaacaataaagttgtctcaaaggttgtaccaaaatggttgttaaaatatcactactct 45405722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 5742622 - 5742544
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||| |||||||||| ||||||| || ||||||| |||||| |||||||||| ||||||||||||||||    
T  5742622 tttttgaccaatgagaagagagaacaacaaagttgtctcaaaggatgtaccaaaatggttgtcaaaatatcactactct 5742544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 28156309 - 28156386
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||| |||||||||| ||||||| || |||||||||||||  |||| ||||| |||||||||||||||    
T  28156309 tttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtactaaaatagttgtcaaaatatcactactc 28156386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 32674171 - 32674119
Alignment:
Q  90 acaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    ||||||| || |||||||||||||  |||||||||| ||||||||||||||||    
T  32674171 acaaagttgtctcaaaggttgtactaaaatggttgtcaaaatatcactactct 32674119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 38939142 - 38939082
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactac 139  Q
    |||||||||| |||||||  | |||||  ||||||| |||||||||| |||||||||||||    
T  38939142 aagagagaacaacaaagttatctcaaaaattgtaccaaaatggttgtcaaaatatcactac 38939082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 2600499 - 2600421
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||| |||||||||| ||||||| || |||||||||||||| |||||||||| ||||||||||||||||    
T  2600499 tttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgtcaaaatatcactactct 2600421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 37970039 - 37970116
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||| |||||||||| ||||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  37970039 tttttgaccaatgagaagagagaacaacaaagttgtctcaaatgttgtaccaaaatggttgttaaaatatcactactc 37970116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 384672 - 384737
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactctaa 144  Q
    |||||||||  ||||||| || |||||||||||| | ||||| || ||||||||||||||||||||    
T  384672 aagagagaataacaaagttgtctcaaaggttgtatcaaaatgatttttaaaatatcactactctaa 384737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 640498 - 640575
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||| |||||||||| ||||||| || |||||| || |||| ||||| |||| |||||||||||||||    
T  640498 tttttgaccaatgagaagagagaacaacaaagttgtctcaaagattataccaaaatgattgtcaaaatatcactactc 640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 11070334 - 11070412
Alignment:
Q  65 tttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||||| |||||||  ||||||| || |||||| || |||| ||||| |||| ||||||||||||||||    
T  11070334 tttttgaccaatgaaaagagagaagaacaaagttgtctcaaagattctaccaaaatgattgtcaaaatatcactactct 11070412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 28548185 - 28548127
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcact 137  Q
    |||||||||| | ||||| || |||||| ||||||  ||||||||||||||||||||||    
T  28548185 aagagagaacaataaagttgtctcaaagattgtactaaaatggttgttaaaatatcact 28548127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 27383848 - 27383811
Alignment:
Q  107 gttgtaccgaaatggttgttaaaatatcactactctaa 144  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  27383848 gttgtaccaaaatggttgttaaaatattactactctaa 27383811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 27943100 - 27943140
Alignment:
Q  101 tcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||| ||||||| ||||| ||||||||||||||||||||    
T  27943100 tcaaagattgtaccaaaatgattgttaaaatatcactactc 27943140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 38724282 - 38724204
Alignment:
Q  65 tttttgactaatgaa-agagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| |||||| ||||||||| ||||||| || |||||||||||||| |||||||||| ||||||||||||||||    
T  38724282 tttttgaccaatgaatagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgtcaaaatatcactactct 38724204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 40721892 - 40721955
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||||| ||||||| || |||||||||||||| |||||||||| ||||||||||||||||    
T  40721892 aagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgtcaaaatatcactactct 40721955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 24727522 - 24727588
Alignment:
Q  78 aaagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactctaa 144  Q
    ||||||||||| | ||||| || |||||||||||||| |||||||||| ||||||||||||||||||    
T  24727522 aaagagagaacaataaagttgtctcaaaggttgtaccaaaatggttgtcaaaatatcactactctaa 24727588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 34373114 - 34373192
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||| |||||||||| ||||||| || ||||||||| |||| |||||||||| ||||||||||||||||    
T  34373114 tttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttataccaaaatggttgtcaaaatatcactactct 34373192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 304957 - 304879
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||| ||||| |||| ||||||| || |||||||||||| | ||||||||||||||||||||| |||||    
T  304957 tttttgaccaatgagaagagtgaacaacaaagttgtctcaaaggttgtatcaaaatggttgttaaaatatcacaactct 304879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 27329078 - 27328988
Alignment:
Q  61 attatttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc-taagaaaa 149  Q
    |||||||||||| ||||| || ||||||| ||||||| || ||||| | |||||| |||| ||||||||||||||||||||| ||||||||    
T  27329078 attatttttgaccaatgagaaaagagaacaacaaagttgtctcaaaagatgtaccaaaattgttgttaaaatatcactactcataagaaaa 27328988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 43026057 - 43026119
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||||| ||||||| || |||||||||||||| ||||| |||| |||||||||||||||    
T  43026057 aagagagaacaacaaagttgtctcaaaggttgtaccaaaatgattgtcaaaatatcactactc 43026119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 1151635 - 1151712
Alignment:
Q  65 tttttgactaatgaaaga-gagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||||| | |||||| ||||||| || |||||||||||||| |||| ||||| |||||||||||||||    
T  1151635 tttttgaccaatgaaaaaagagaacaacaaagttgtctcaaaggttgtaccaaaatagttgtcaaaatatcactactc 1151712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 9377708 - 9377647
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactact 140  Q
    |||||||||| ||||||| || ||||||||| |||| |||||||||||||||||||| ||||    
T  9377708 aagagagaacaacaaagttgtctcaaaggttataccaaaatggttgttaaaatatcattact 9377647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 4858219 - 4858295
Alignment:
Q  65 tttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactact 140  Q
    |||||||| ||||||| |||||||| ||||| | || |||||||||||||| ||||| |||| ||||||||||||||    
T  4858219 tttttgaccaatgaaaagagagaacaacaaaattgtctcaaaggttgtaccaaaatgattgtcaaaatatcactact 4858295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 11728086 - 11728009
Alignment:
Q  65 tttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    |||||||| ||||||| |||| ||| ||||||| || | |||| ||||||| ||||| ||||||||||||||||||||    
T  11728086 tttttgaccaatgaaaagagaaaacaacaaagttgtcttaaagattgtaccaaaatgattgttaaaatatcactactc 11728009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 37827753 - 37827677
Alignment:
Q  62 ttatttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcact 137  Q
    ||||||||||| ||||||| |||||||| ||||||| || | |||| ||||||| ||||  ||||||||||||||||    
T  37827753 ttatttttgaccaatgaaaagagagaacaacaaagttgtcttaaagattgtaccaaaataattgttaaaatatcact 37827677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 13850153 - 13850076
Alignment:
Q  61 attatttttgactaatgaaa-gagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcact 137  Q
    |||||||||||| ||||||| |||||||| ||||| | || ||||| ||| |||| |||| ||||| |||||||||||    
T  13850153 attatttttgaccaatgaaaagagagaacaacaaaattgtctcaaaagttataccaaaatagttgtcaaaatatcact 13850076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 50025650 - 50025571
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactcta 143  Q
    |||||||| ||||| |||||||||| ||||||| || |||||||||||||| |||||||||| ||||||||| |||||||    
T  50025650 tttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgtgaaaatatcattactcta 50025571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 2280283 - 2280361
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||| ||||| |||||||||| ||||||| || |||||| ||||||| |||||||||| ||||||||||||||||    
T  2280283 tttttgaccaatgagaagagagaacaacaaagttgtctcaaagattgtaccaaaatggttgtcaaaatatcactactct 2280361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 14847468 - 14847404
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactcta 143  Q
    |||| ||||| ||||||| || | |||||||||||| |||||||||| |||||||||||||||||    
T  14847468 aagatagaacaacaaagttgtctaaaaggttgtaccaaaatggttgtcaaaatatcactactcta 14847404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 29533867 - 29533943
Alignment:
Q  65 tttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactact 140  Q
    |||||||| ||||| |||||||||| ||||||| || ||||| |||||||| ||||| |||| ||||||||||||||    
T  29533867 tttttgaccaatgagaagagagaacaacaaagttgtctcaaaagttgtaccaaaatgattgtcaaaatatcactact 29533943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 16295584 - 16295647
Alignment:
Q  78 aaagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactc 141  Q
    ||||||||||| ||||||| || ||||| |||||||| |||| ||||| |||||||||||||||    
T  16295584 aaagagagaacaacaaagttgtctcaaaagttgtaccaaaatagttgtcaaaatatcactactc 16295647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 3210604 - 3210563
Alignment:
Q  101 tcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  3210604 tcaaaggttgtaccaaaatggtagttaaaatatcactactct 3210563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 38471763 - 38471828
Alignment:
Q  79 aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactctaa 144  Q
    |||||||||| ||||||| || |||||| ||||||| ||||  |||| ||||||||||||||||||    
T  38471763 aagagagaacaacaaagttgtctcaaagattgtaccaaaataattgtcaaaatatcactactctaa 38471828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 10565176 - 10565237
Alignment:
Q  82 agagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactctaa 144  Q
    ||||||| | ||||| || |||||||| ||||| |||||||||||||||||||||| ||||||    
T  10565176 agagaacaataaagttgtctcaaaggt-gtaccaaaatggttgttaaaatatcactgctctaa 10565237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 25806471 - 25806413
Alignment:
Q  82 agagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactact 140  Q
    ||||||| ||||| | |||| |||||||||||| ||||| |||||||||||| ||||||    
T  25806471 agagaacaacaaaattgtttaaaaggttgtaccaaaatgattgttaaaatattactact 25806413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 33074997 - 33075054
Alignment:
Q  82 agagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactac 139  Q
    ||||||| ||||||| || |||||||||||||  |||| ||||| |||||||||||||    
T  33074997 agagaacaacaaagttgtctcaaaggttgtactaaaatagttgtcaaaatatcactac 33075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 52381243 - 52381287
Alignment:
Q  98 gtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    |||| |||||||||||  |||||||||| ||||||||||||||||    
T  52381243 gttttaaaggttgtactaaaatggttgtcaaaatatcactactct 52381287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 34976723 - 34976800
Alignment:
Q  66 ttttgactaatga-aagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcactactct 142  Q
    ||||||| ||||| |||||||||| |||||||  | |||||||||||||| |||||||||  ||||||||||||||||    
T  34976723 ttttgaccaatgagaagagagaacaacaaagttatctcaaaggttgtaccaaaatggttgacaaaatatcactactct 34976800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 54613 - 54553
Alignment:
Q  78 aaagagagaacgacaaagtagtttcaaaggttgtaccgaaatggttgttaaaatatcacta 138  Q
    ||||||||||| ||||||| || |||||| ||||||| |||| ||||| ||||||||||||    
T  54613 aaagagagaacaacaaagttgtctcaaagattgtaccaaaatagttgtcaaaatatcacta 54553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University