View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_21 (Length: 293)
Name: NF5961_low_21
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 27561486 - 27561759
Alignment:
| Q |
1 |
tatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcgctgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
27561486 |
tatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccactcaatttcgctgaa |
27561585 |
T |
|
| Q |
101 |
tgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27561586 |
tgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttcgatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaa |
27561685 |
T |
|
| Q |
201 |
gatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatcca |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27561686 |
gatatcacacgaaactcagctttgatatcatttctccctaaaacgtttaatattgtaagaaatgaggagatcca |
27561759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 36668361 - 36668632
Alignment:
| Q |
5 |
tagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcgctg--aatg |
102 |
Q |
| |
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||||||| |||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || | | |
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| T |
36668361 |
tagataactttctgtaaaagacctatcacaaagaaggtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaatttctctcttagcg |
36668460 |
T |
|
| Q |
103 |
aatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaaga |
202 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36668461 |
aatgtgctttcgcacgcaatgatacagcttcatgagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaggctgaaga |
36668560 |
T |
|
| Q |
203 |
tatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatcca |
274 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36668561 |
catcacaccaaactcagctttgatatcttttctccctgaaacatttaatattgtaagaaatgaggagatcca |
36668632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 31707837 - 31707880
Alignment:
| Q |
231 |
tttctccctgaaacgtttaatattgtaagaaatgaggagatcca |
274 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
31707837 |
tttctccttgaaacatttaatattgtaagaaatgaggagatcca |
31707880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 36672887 - 36672766
Alignment:
| Q |
107 |
tgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccca-tttctttagataaagctgaagat-a |
204 |
Q |
| |
|
||||||||||| ||||| |||| ||| ||||||| |||||||||||| ||||||||| ||| ||||||| | ||| ||||||||||||| | ||| | |
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| T |
36672887 |
tgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactgatcttctgtcatcccaattttttttagataaagct-atgatca |
36672789 |
T |
|
| Q |
205 |
tcacacgaaactcagctttgata |
227 |
Q |
| |
|
||||||| |||||| |||||||| |
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| T |
36672788 |
tcacacgtaactcaactttgata |
36672766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 262
Target Start/End: Complemental strand, 27563519 - 27563382
Alignment:
| Q |
125 |
tacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccc-atttctttagataaagctgaagat-atcacacgaaactcagctt |
222 |
Q |
| |
|
|||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||||| |||||| | |
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| T |
27563519 |
tacaacttcaagagctgcatccttctatcacttcaactgctcttccatcatccccgatttttttagataaagct-aagatcatcacacataactca-agt |
27563422 |
T |
|
| Q |
223 |
tgatatcatttctccctgaaacgtttaatattgtaagaaa |
262 |
Q |
| |
|
||||||| | |||||||||||| | ||||| |||||||| |
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|
| T |
27563421 |
tgatatcttctctccctgaaacatgcaatatggtaagaaa |
27563382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 24202703 - 24202445
Alignment:
| Q |
5 |
tagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcgctg--aatg |
102 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||| | || |
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| T |
24202703 |
tagataaattgctgtaaaagacctatcacaaagtcggtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactcaatttcgctcttagtg |
24202604 |
T |
|
| Q |
103 |
aatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaaga |
202 |
Q |
| |
|
||||||||||||||||||| | ||| |||| ||| |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||| |
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|
| T |
24202603 |
aatgtgctttctcacgcaaggatacggcttcaagtgctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctttagataaagttgaagc |
24202504 |
T |
|
| Q |
203 |
tatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaa |
261 |
Q |
| |
|
|| |||||||||||| |||||||||| ||| |||||||||| |||||||||||||||| |
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|
| T |
24202503 |
cataacacgaaactcaactttgatatcttttgtccctgaaacatttaatattgtaagaa |
24202445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 29410894 - 29411164
Alignment:
| Q |
6 |
agataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaattt--cgctgaatga |
103 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||| | ||| || |||||||||| ||| ||||||| | || | ||| |
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| T |
29410894 |
agatgaatttctgtaaaagacttatcacaaagtaggcgagaaagaaaatgaaagggtactttatgcgaataacctttccactcaatttttctcttagtga |
29410993 |
T |
|
| Q |
104 |
atgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaagat |
203 |
Q |
| |
|
||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
29410994 |
atgcgctttctcacgtaatgatacagcttcaagagctgcatctttccatcgcttcacctgcgcgtccatcatccccatttctttagataaagctgaagcc |
29411093 |
T |
|
| Q |
204 |
atcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatcca |
274 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||||| ||||| | ||||||||| |||| |||||| |
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|
| T |
29411094 |
atcacacgaaactcggctttgatgtcttttctccctgaaaaatttaacagtgtaagaaacgaggggatcca |
29411164 |
T |
|
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