View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_29 (Length: 277)
Name: NF5961_low_29
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 18219681 - 18219930
Alignment:
| Q |
11 |
agaatatcacaaagcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataatgattttgcaatgaaaacattcaatcaatgagca |
110 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18219681 |
agaatattacaacgcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataattattttgcaatgaaaacattcaatcaatgagca |
18219780 |
T |
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| Q |
111 |
ctcaatagaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccag |
210 |
Q |
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| T |
18219781 |
ctcaataaaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccag |
18219880 |
T |
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| Q |
211 |
ctccaaataaatatcctgcaattcaacagataaaatcattattaaaagct |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219881 |
ctccaaataaatatcctgcaattcaacagataaaatcattattaaaagct |
18219930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 43011507 - 43011754
Alignment:
| Q |
11 |
agaatatcacaaagcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataatgattttgcaatgaaaacattcaatcaatgagca |
110 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||| |||| |
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| T |
43011507 |
agaatatttcaaagcaatcatcagcatcattattttattgtattctgatgaatgtaggtagcataattattttgcattgaaaaaattcaatcaataagca |
43011606 |
T |
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| Q |
111 |
-ctcaatagaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaacca |
209 |
Q |
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| T |
43011607 |
gctcaataaaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaacca |
43011706 |
T |
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| Q |
210 |
gctccaaataaatatcctgcaattcaacagataaaatcattattaaaa |
257 |
Q |
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||||||||||||||||||| ||| |||||||| ||| |||||||||| |
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| T |
43011707 |
gctccaaataaatatcctgaaatataacagatagaataattattaaaa |
43011754 |
T |
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