View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5961_low_30 (Length: 276)

Name: NF5961_low_30
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5961_low_30
NF5961_low_30
[»] chr2 (11 HSPs)
chr2 (22-133)||(14498844-14498952)
chr2 (22-133)||(14500708-14500818)
chr2 (201-259)||(14499016-14499074)
chr2 (201-259)||(14500884-14500942)
chr2 (201-258)||(34431819-34431876)
chr2 (222-261)||(12070868-12070907)
chr2 (201-258)||(14255324-14255382)
chr2 (201-259)||(22525986-22526044)
chr2 (79-133)||(32628308-32628362)
chr2 (201-250)||(25881574-25881623)
chr2 (206-258)||(4657323-4657375)
[»] chr4 (8 HSPs)
chr4 (206-261)||(56474761-56474816)
chr4 (206-259)||(31468986-31469039)
chr4 (201-258)||(40427972-40428029)
chr4 (206-261)||(44257727-44257782)
chr4 (201-258)||(30170012-30170069)
chr4 (206-259)||(52895248-52895301)
chr4 (81-133)||(14603582-14603634)
chr4 (206-258)||(56557755-56557807)
[»] chr7 (10 HSPs)
chr7 (211-259)||(5174554-5174602)
chr7 (201-260)||(3343322-3343381)
chr7 (206-259)||(6269387-6269440)
chr7 (206-259)||(18111609-18111662)
chr7 (206-259)||(34108852-34108905)
chr7 (201-250)||(31844597-31844646)
chr7 (201-258)||(39416079-39416136)
chr7 (206-259)||(40854652-40854705)
chr7 (206-259)||(41430149-41430202)
chr7 (206-257)||(39029883-39029932)
[»] chr6 (5 HSPs)
chr6 (226-261)||(25142568-25142603)
chr6 (206-259)||(1376385-1376438)
chr6 (206-259)||(1384133-1384186)
chr6 (206-259)||(13422989-13423042)
chr6 (206-250)||(5570331-5570375)
[»] chr5 (7 HSPs)
chr5 (201-260)||(19839978-19840037)
chr5 (206-259)||(6758788-6758841)
chr5 (201-260)||(32912058-32912117)
chr5 (222-259)||(21012589-21012626)
chr5 (83-132)||(33599088-33599137)
chr5 (206-259)||(38293356-38293409)
chr5 (206-250)||(22649659-22649703)
[»] chr1 (8 HSPs)
chr1 (206-259)||(21433398-21433451)
chr1 (211-258)||(1689413-1689460)
chr1 (206-261)||(30536010-30536065)
chr1 (201-259)||(52362503-52362561)
chr1 (226-259)||(38114293-38114326)
chr1 (201-258)||(47214230-47214287)
chr1 (226-258)||(12127887-12127919)
chr1 (206-250)||(50775154-50775198)
[»] chr8 (9 HSPs)
chr8 (206-258)||(7777177-7777229)
chr8 (76-132)||(12734900-12734956)
chr8 (201-248)||(5864235-5864282)
chr8 (206-261)||(28756554-28756609)
chr8 (201-259)||(9549191-9549249)
chr8 (201-250)||(6991800-6991849)
chr8 (206-259)||(12735009-12735062)
chr8 (206-259)||(42786657-42786710)
chr8 (206-258)||(7795302-7795354)
[»] chr3 (7 HSPs)
chr3 (201-253)||(8846518-8846570)
chr3 (81-132)||(12762583-12762634)
chr3 (81-132)||(34532315-34532366)
chr3 (201-259)||(24095398-24095456)
chr3 (206-250)||(6178423-6178467)
chr3 (201-261)||(19150311-19150371)
chr3 (206-262)||(40554883-40554939)
[»] scaffold0053 (1 HSPs)
scaffold0053 (206-259)||(12518-12571)
[»] scaffold0005 (1 HSPs)
scaffold0005 (81-133)||(213744-213796)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 14498844 - 14498952
Alignment:
Q  22 tgtatacaataaaagaagcattaattttannnnnnnngtgtgaatattccgtaaagatttgttatctgaacaatcatttatatgataatttatgagacaa 121  Q
    |||||||||||||||||||||||| |||         ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14498844 tgtatacaataaaagaagcattaacttt---ttttttgtgtgaatactccgtaaagatttgttatttgaacaatcatttatatgataatttatgagacaa 14498940  T
Q  122 ctataaatttat 133  Q
    ||||||||||||    
T  14498941 ctataaatttat 14498952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 14500708 - 14500818
Alignment:
Q  22 tgtatacaataaaagaagcattaattttannnnnnnngtgtgaatattccgtaaagatttgttatctgaacaatcatttatatgataatttatgagacaa 121  Q
    |||||||||||||||||||||||| |||         |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14500708 tgtatacaataaaagaagcattaacttt-ttttttttgtgtgaatattccgtaaagatttgttatttgaacaatcatttatatgataatttatgagacaa 14500806  T
Q  122 ctataaatttat 133  Q
    || |||||||||    
T  14500807 ctgtaaatttat 14500818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 14499016 - 14499074
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14499016 aaagtaaaacataatgtgagtatatgagagaaaattgtcacaaaaattgttataaaatg 14499074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 14500884 - 14500942
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14500884 aaagtaaaacataatgtgattatatgagaaaaaattgtcacaaaaattgttataaaatg 14500942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 34431819 - 34431876
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    ||||| ||| ||||||||| |||| |||||||| |||||||||||||||||| |||||    
T  34431819 aaagtgaaaaataatgtgagtataagagagaaagttgtcacaaaaattgttacaaaat 34431876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 12070907 - 12070868
Alignment:
Q  222 atatgagagaaaattgtcacaaaaattgttataaaatgat 261  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  12070907 atatgagagaaagttgtcacaaaaattgttagaaaatgat 12070868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 14255382 - 14255324
Alignment:
Q  201 aaagtaaaac-ataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    |||||||||| || |||||| ||| ||||||||||||||||||||| |||| |||||||    
T  14255382 aaagtaaaaccatgatgtgagtatgtgagagaaaattgtcacaaaagttgtcataaaat 14255324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 22525986 - 22526044
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    ||||||||| ||||||||| ||||  ||||||| |||||||||||||||| | ||||||    
T  22525986 aaagtaaaaaataatgtgaatataaaagagaaagttgtcacaaaaattgtcaaaaaatg 22526044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 32628362 - 32628308
Alignment:
Q  79 tttgttatctgaacaatcatttatatgataatttatgagacaactataaatttat 133  Q
    |||||||| ||||||| |||||  ||||||| || ||||||||||||||||||||    
T  32628362 tttgttatttgaacaaccattttaatgataacttttgagacaactataaatttat 32628308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 25881623 - 25881574
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgt 250  Q
    ||||||||| ||||||||| |||  |||||||| ||||||||||||||||    
T  25881623 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaaattgt 25881574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 4657375 - 4657323
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    |||| ||||||||| |||| |||| |||||||||||||||||| ||| |||||    
T  4657375 aaaatataatgtgaatataagagaaaaaattgtcacaaaaattattagaaaat 4657323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 56474761 - 56474816
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatgat 261  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||    
T  56474761 aaaacataatgtgagtataagagagaaaattgtcacaaaaattgtaaaaaaatgat 56474816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 31468986 - 31469039
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| |||||||||  ||| ||||||||||||||||||||||||||| ||||||    
T  31468986 aaaatataatgtgagcataagagagaaaattgtcacaaaaattgttagaaaatg 31469039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 40428029 - 40427972
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    ||||||||| ||||||||| ||||  | ||||||||||||||||| ||||||||||||    
T  40428029 aaagtaaaaaataatgtgaatataaaatagaaaattgtcacaaaagttgttataaaat 40427972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 44257727 - 44257782
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatgat 261  Q
    |||| ||||||||| |||  |||||||| |||||||||||||||||| ||||||||    
T  44257727 aaaatataatgtgagtatgagagagaaagttgtcacaaaaattgttagaaaatgat 44257782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 30170012 - 30170069
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    ||||||||| ||||||||| |||  |||||||| ||||||||||| |||| |||||||    
T  30170012 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaat 30170069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 52895301 - 52895248
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    ||||||||||||||||||  |||| ||| |||||||||||||||| || |||||    
T  52895301 aaaacataatgtgattatgagagataaagttgtcacaaaaattgtcatgaaatg 52895248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 14603634 - 14603582
Alignment:
Q  81 tgttatctgaacaatcatttatatgataatttatgagacaactataaatttat 133  Q
    |||||| |||||||||||||  |||| ||||| ||||||||| ||||||||||    
T  14603634 tgttatttgaacaatcatttccatgacaatttttgagacaaccataaatttat 14603582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 56557807 - 56557755
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    |||||| ||||||| |||  |||||||||||||||||||| |||| |||||||    
T  56557807 aaaacacaatgtgagtatgagagagaaaattgtcacaaaagttgtcataaaat 56557755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 5174554 - 5174602
Alignment:
Q  211 ataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  5174554 ataatgtgagtataagagagaaagttgtcacaaaaattgttataaaatg 5174602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 3343322 - 3343381
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatga 260  Q
    |||||||||  |||||||| |||  ||||||||||||||||||||||||| |||||||||    
T  3343322 aaagtaaaaagtaatgtgaatatgagagagaaaattgtcacaaaaattgtcataaaatga 3343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 6269440 - 6269387
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||  |||||||| |||||||||||||||||||||||||    
T  6269440 aaaatataatgtgagtatgagagagaaagttgtcacaaaaattgttataaaatg 6269387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 18111609 - 18111662
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||  ||||||||||||||||||||||| ||||||||||    
T  18111609 aaaatataatgtgagtatgagagagaaaattgtcacaaaaattattataaaatg 18111662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 34108852 - 34108905
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||||||||||||| |||  |||||||||||||||||||| |||||| ||||||    
T  34108852 aaaacataatgtgagtatgagagagaaaattgtcacaaaagttgttagaaaatg 34108905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 31844597 - 31844646
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgt 250  Q
    ||||||||| ||||||||| ||||  |||||||||||||| |||||||||    
T  31844597 aaagtaaaaaataatgtgagtataaaagagaaaattgtcataaaaattgt 31844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 39416079 - 39416136
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    ||||||||| ||||||||| ||||  ||| |||||||||| ||||||||||| |||||    
T  39416079 aaagtaaaaaataatgtgagtataaaagaaaaaattgtcataaaaattgttacaaaat 39416136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 40854652 - 40854705
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||  |||||||||||||||||||| |||||| ||||||    
T  40854652 aaaatataatgtgagtatgagagagaaaattgtcacaaaagttgttagaaaatg 40854705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 41430149 - 41430202
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||| |||||||| ||||||||||| |||||| ||||||    
T  41430149 aaaatataatgtgagtataagagagaaagttgtcacaaaagttgttagaaaatg 41430202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 39029932 - 39029883
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaa 257  Q
    |||||||||||||| |||  |||||||| ||||||||||||||||| |||||    
T  39029932 aaaacataatgtgagtat--gagagaaagttgtcacaaaaattgttgtaaaa 39029883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 25142568 - 25142603
Alignment:
Q  226 gagagaaaattgtcacaaaaattgttataaaatgat 261  Q
    ||||||||||||||||||||||||||||||||||||    
T  25142568 gagagaaaattgtcacaaaaattgttataaaatgat 25142603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 1376438 - 1376385
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||| |||||||| ||||||||||| |||||| ||||||    
T  1376438 aaaatataatgtgagtataagagagaaagttgtcacaaaagttgttagaaaatg 1376385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 1384186 - 1384133
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||| |||||||| ||||||||||| |||||| ||||||    
T  1384186 aaaatataatgtgagtataagagagaaagttgtcacaaaagttgttagaaaatg 1384133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 13423042 - 13422989
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||  |||||||| ||||||||||||||||||| |||||    
T  13423042 aaaatataatgtgagtatgagagagaaagttgtcacaaaaattgttatgaaatg 13422989  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 5570331 - 5570375
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgt 250  Q
    |||| ||||||||| |||  |||||||||||||||||||||||||    
T  5570331 aaaatataatgtgagtatgagagagaaaattgtcacaaaaattgt 5570375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 19839978 - 19840037
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatga 260  Q
    ||||||||| ||||||||| |||  |||||||| |||||||||||||||| |||||||||    
T  19839978 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaaattgtcataaaatga 19840037  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 6758788 - 6758841
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||| |||||||| |||||||||||||||||| ||||||    
T  6758788 aaaatataatgtgagtataagagagaaagttgtcacaaaaattgttagaaaatg 6758841  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 32912117 - 32912058
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatga 260  Q
    |||||||||  |||||||| |||  ||||||||||||||||||||||| | |||||||||    
T  32912117 aaagtaaaaagtaatgtgagtatgagagagaaaattgtcacaaaaattatcataaaatga 32912058  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 21012626 - 21012589
Alignment:
Q  222 atatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  21012626 atatgagagaaagttgtcacaaaaattgtcataaaatg 21012589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 33599137 - 33599088
Alignment:
Q  83 ttatctgaacaatcatttatatgataatttatgagacaactataaattta 132  Q
    |||| ||||||| ||||||||||||||||| |  ||||||||||||||||    
T  33599137 ttatttgaacaaccatttatatgataatttttatgacaactataaattta 33599088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 38293356 - 38293409
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||   ||||||| |||||||||||||||||||||||||    
T  38293356 aaaatataatgtgagtatgatagagaaagttgtcacaaaaattgttataaaatg 38293409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 22649659 - 22649703
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgt 250  Q
    |||| ||||||||| |||  |||||||||||||||||||||||||    
T  22649659 aaaagataatgtgagtatgagagagaaaattgtcacaaaaattgt 22649703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 21433398 - 21433451
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||||||||||||| |||| |||||||| ||||||||||| |||||| ||||||    
T  21433398 aaaacataatgtgagtataagagagaaagttgtcacaaaagttgttacaaaatg 21433451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 1689460 - 1689413
Alignment:
Q  211 ataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    ||||||||| |||  |||||||| ||||||||||||||||||||||||    
T  1689460 ataatgtgagtatgagagagaaagttgtcacaaaaattgttataaaat 1689413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 30536065 - 30536010
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatgat 261  Q
    |||| ||||||||| |||  |||||||| |||||||||||||||||| ||||||||    
T  30536065 aaaatataatgtgagtatgagagagaaagttgtcacaaaaattgttaaaaaatgat 30536010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 52362561 - 52362503
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    ||||||||| ||||||||| |||  |||||||| ||||||||||| |||| ||||||||    
T  52362561 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatg 52362503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 38114293 - 38114326
Alignment:
Q  226 gagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||||||| |||||||||||||||||||||||||    
T  38114293 gagagaaagttgtcacaaaaattgttataaaatg 38114326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 47214287 - 47214230
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    ||||||||| ||||||||| |||  |||||||| ||||||||||| |||| |||||||    
T  47214287 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaat 47214230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 12127919 - 12127887
Alignment:
Q  226 gagagaaaattgtcacaaaaattgttataaaat 258  Q
    |||| ||||||||||||||||||||||||||||    
T  12127919 gagaaaaaattgtcacaaaaattgttataaaat 12127887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 50775154 - 50775198
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgt 250  Q
    |||||||||||||| |||  |||||||| ||||||||||||||||    
T  50775154 aaaacataatgtgagtatgagagagaaagttgtcacaaaaattgt 50775198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 7777177 - 7777229
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    |||| ||||||||| |||| |||||||| |||||||||||||||||| |||||    
T  7777177 aaaatataatgtgagtataagagagaaagttgtcacaaaaattgttaaaaaat 7777229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 12734900 - 12734956
Alignment:
Q  76 agatttgttatctgaacaatcatttatatgataatttatgagacaactataaattta 132  Q
    |||| |||||| |||||||| |||| |||||||||||||| |||||||| |||||||    
T  12734900 agatgtgttatttgaacaataatttgtatgataatttatgtgacaactaaaaattta 12734956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 5864282 - 5864235
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaatt 248  Q
    ||||||||| |||||||||||||  ||||||||||||| |||||||||    
T  5864282 aaagtaaaaaataatgtgattatgagagagaaaattgttacaaaaatt 5864235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 28756609 - 28756554
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatgat 261  Q
    |||| ||||||||| |||  |||| |||||||||||||||||| ||||||||||||    
T  28756609 aaaatataatgtgagtatgagagataaaattgtcacaaaaattattataaaatgat 28756554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 9549191 - 9549249
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    ||||||||| ||||||||| |||  |||||||||||||||||||| |||| | ||||||    
T  9549191 aaagtaaaaaataatgtgagtatgagagagaaaattgtcacaaaagttgtcacaaaatg 9549249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 6991800 - 6991849
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgt 250  Q
    ||||||||| ||||||||| |||  ||||||||||| |||||||||||||    
T  6991800 aaagtaaaaaataatgtgagtatgagagagaaaattatcacaaaaattgt 6991849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 12735009 - 12735062
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||||||||| ||| |||  |||||||||||||||||||| |||| ||||||||    
T  12735009 aaaacataatatgagtatgagagagaaaattgtcacaaaagttgtcataaaatg 12735062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 42786657 - 42786710
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||||||| |||| |||||||| |||||||||||||||| | ||||||    
T  42786657 aaaatataatgtgagtataagagagaaagttgtcacaaaaattgtaagaaaatg 42786710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 7795302 - 7795354
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaat 258  Q
    |||| ||||||| | |||| |||||||||||||||||||| |||||| |||||    
T  7795302 aaaatataatgtaagtataagagagaaaattgtcacaaaagttgttaaaaaat 7795354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 8846570 - 8846518
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttat 253  Q
    ||||||||| ||||||||| |||  |||||||||||||||||||| |||||||    
T  8846570 aaagtaaaaaataatgtgagtatgagagagaaaattgtcacaaaagttgttat 8846518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 12762583 - 12762634
Alignment:
Q  81 tgttatctgaacaatcatttatatgataatttatgagacaactataaattta 132  Q
    |||||| |||||||||||||| |||| |||||||| |||||| |||||||||    
T  12762583 tgttatttgaacaatcatttacatgacaatttatgggacaaccataaattta 12762634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 34532366 - 34532315
Alignment:
Q  81 tgttatctgaacaatcatttatatgataatttatgagacaactataaattta 132  Q
    |||||| |||||||||||||| ||||||||||||| |||||| ||| |||||    
T  34532366 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatattta 34532315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 24095398 - 24095456
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    ||||||||| ||||||||| |||  |||||||| |||||||||||||| | ||||||||    
T  24095398 aaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaaattatcataaaatg 24095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 6178423 - 6178467
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgt 250  Q
    |||||||||||||| |||  |||||||||||||||||||| ||||    
T  6178423 aaaacataatgtgagtatgagagagaaaattgtcacaaaagttgt 6178467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 19150311 - 19150371
Alignment:
Q  201 aaagtaaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatgat 261  Q
    ||||||||| ||||||| | |||  |||||||| ||||||||||| |||||| ||||||||    
T  19150311 aaagtaaaatataatgtaaatatgagagagaaagttgtcacaaaagttgttaaaaaatgat 19150371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 40554883 - 40554939
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatgatg 262  Q
    |||||| |||||||||||| ||||||||  | |||||||| ||||| ||||||||||    
T  40554883 aaaacacaatgtgattataagagagaaagatatcacaaaagttgttttaaaatgatg 40554939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 12571 - 12518
Alignment:
Q  206 aaaacataatgtgattatatgagagaaaattgtcacaaaaattgttataaaatg 259  Q
    |||| ||||| ||| |||| |||||||| |||||||||||||||||| ||||||    
T  12571 aaaatataatatgagtataagagagaaagttgtcacaaaaattgttagaaaatg 12518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 213744 - 213796
Alignment:
Q  81 tgttatctgaacaatcatttatatgataatttatgagacaactataaatttat 133  Q
    |||||| |||||||||||||  |||| ||||| ||||||||| ||||||||||    
T  213744 tgttatttgaacaatcatttccatgacaatttttgagacaaccataaatttat 213796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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