View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_33 (Length: 272)
Name: NF5961_low_33
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 37157875 - 37158137
Alignment:
| Q |
10 |
agaagaaccaacagagctgtaacataaaacaataaattgctgttattattaaattaatgcaatggtaaaataaaatatttgtaagcttctttctattttg |
109 |
Q |
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| T |
37157875 |
agaagaaccaacagagctgtaacataaaacaataaattgctgttattattaaattaatgcaatggtaaaataaaatatttgtaagcttctttctattttg |
37157974 |
T |
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| Q |
110 |
gcaaattagtaatgttatgatatgacacatacccaggtgaagaatagacacagtttccataacctgatgagnnnnnnnnnnnntacaaacggttgagtat |
209 |
Q |
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| T |
37157975 |
gcaaattagtaatgttatgatatgacacatacccaggtgaagaatagacacagtttccataacctgatgagaaaaaagaaaaatacaaacggttgagtat |
37158074 |
T |
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| Q |
210 |
tatgtactcaaattccacaaagctggattaattaaagttgtgagaagaaaatatggtgtccat |
272 |
Q |
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| T |
37158075 |
tatgtactcaaattccacaaagctggattaattaaagttgtgagaagaaaatatggtgtccat |
37158137 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 7828853 - 7828937
Alignment:
| Q |
10 |
agaagaaccaacagagctgtaacataaaacaataaattgctgttattattaaattaatgcaatggtaaaataaaatatttgtaagcttct |
99 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||| |
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| T |
7828853 |
agaacaaccaacaaagctgtaacataaaacaataaattgctgtaattattaa-----tgtaatggtaaaataaagtatttgtaagcttct |
7828937 |
T |
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