View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5961_low_35 (Length: 269)

Name: NF5961_low_35
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5961_low_35
NF5961_low_35
[»] chr7 (16 HSPs)
chr7 (1-269)||(22875713-22875981)
chr7 (1-269)||(22889083-22889357)
chr7 (1-269)||(22839843-22840117)
chr7 (1-269)||(22814818-22815092)
chr7 (1-267)||(22830822-22831094)
chr7 (1-255)||(22880382-22880642)
chr7 (5-269)||(22893748-22894009)
chr7 (1-91)||(22885416-22885506)
chr7 (5-269)||(22898067-22898328)
chr7 (1-269)||(22858250-22858527)
chr7 (1-178)||(22805109-22805283)
chr7 (1-269)||(22809432-22809709)
chr7 (1-117)||(22913465-22913578)
chr7 (5-117)||(22826053-22826162)
chr7 (163-269)||(22885556-22885659)
chr7 (234-269)||(22913698-22913733)
[»] chr1 (1 HSPs)
chr1 (1-269)||(21150649-21150923)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 22875713 - 22875981
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875713 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctatt 22875812  T
Q  101 ggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatcgattat 200  Q
    ||||||||||||||||| |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875813 ggagctaaagtaacatcaatcttttttttcactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatcgattat 22875912  T
Q  201 attcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875913 attcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 22875981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 22889083 - 22889357
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatc---- 96  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |        
T  22889083 tgaagatgagaatccaacatacattctattgttgagaattgaagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcaccaaca 22889182  T
Q  97 --tattggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatc 194  Q
       ||||| |||||||||||||| |||        |||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||| |||||     
T  22889183 ctcattggtgctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgcatagggtatccactggaaagggataaatccttgaatt 22889282  T
Q  195 gattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
    ||  |||  |||| |||||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||    
T  22889283 gaccataaccatcataatatcctgcaggagttgaatcagctgatttcaaatcattgatatcaattccaacatggt 22889357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 22839843 - 22840117
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctat- 99  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||| ||||  | | |      
T  22839843 tgaagatgagaatccaacatacattctattgttgagaattggggaaagatctttggtcaatgataacgtcggttgtgttggtttatgactaaaaccaaca 22839942  T
Q  100 -----tggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatc 194  Q
         ||||||||| |||||||| |||        ||||| |||||| ||||||||||| ||||| |||||||||||| | |||||||||||||||||||    
T  22839943 ctaaatggagctaaggtaacatcaatctttttcttcactctatcatattcaatccatacttgcataggatatccactggagagggataaatccctgaatc 22840042  T
Q  195 gattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
    |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  22840043 gattatattcatcgtaatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggt 22840117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 22814818 - 22815092
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatc---- 96  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |        
T  22814818 tgaagatgagaatccaacatacattctattgttgagaattgaagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcaccaaca 22814917  T
Q  97 --tattggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatc 194  Q
       |||||||||||||||||||| |||        ||||||||||||||||||||||||||| || ||| ||||| || |||||||||| |||||||||     
T  22814918 ctcattggagctaaagtaacatcaatctttttcttcactccatcatagtcaatccatacctgtataggaaatccattggaaagggataactccctgaatt 22815017  T
Q  195 gattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
    ||  ||  ||||  |||||||||| || ||||||| ||||||||||||||| ||||||||| || ||||||||||    
T  22815018 gaccatgatcattataatatcctgcaggagttgaattagctgatttcaaataattgatatcgataccaacatggt 22815092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 22830822 - 22831094
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctat- 99  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||| ||||  | | |      
T  22830822 tgaagatgagaatccaacatacattctattgttgagaattggggaaagatctttggtcaatgataacgtcggttgtgttggtttatgactaaaaccaaca 22830921  T
Q  100 -----tggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatc 194  Q
         ||||||||| |||||||| |||        |||||||||||| ||||||||||||||||| |||| |||||||  ||||||||||| ||||||||    
T  22830922 ctaactggagctaaggtaacatcaatctttttcttcactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatc 22831021  T
Q  195 gattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatg 267  Q
    ||  |   ||||| |||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||    
T  22831022 gaccagtatcatcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaattccaacatg 22831094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 22880382 - 22880642
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatcta-- 98  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| ||  | | |      
T  22880382 tgaagatgataatccaacatacatactattgttgagaattggagaaagatctttggtcaatgacaacaaatgtcgtgttggtttattattaaaaccaaca 22880481  T
Q  99 ----ttggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatc 194  Q
        | |||||||| ||||| || |||        ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  22880482 ctaatcggagctaatgtaacctcaatctttttcttcactccatcatagtcaatccatacctgcatgggatatccactggaaagggataaatccttgaatc 22880581  T
Q  195 gattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatc 255  Q
    ||| ||| ||||| |||||||||| |||| ||||| |  ||||||||||||||||||||||    
T  22880582 gatcataatcatcataatatcctgcagaaattgaatttactgatttcaaatcattgatatc 22880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 22893748 - 22894009
Alignment:
Q  5 gatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctattggag 104  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||  || | |||  |||||||    
T  22893748 gatgaaaatccaacatacatactattgttaagaattggagaaagatctttggtcaatgataacaaaggttgttttggttta--ac-aacattaattggag 22893844  T
Q  105 ctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatcgattatattc 204  Q
    ||||||||||||| |||          | |||||||| ||||||||||||||||| ||||| ||||||| ||||  || || | ||||| ||  ||   |    
T  22893845 ctaaagtaacatcaatctttttcttttcaccatcatattcaatccatacctgcataggatagccactgataaggcttatattcttgaattgaccattacc 22893944  T
Q  205 atcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
    ||| |||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  22893945 atcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggt 22894009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 22885416 - 22885506
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattacta 91  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22885416 tgaagatgagaatccaacatacattctattgttgagtattggagaaagatctttggtcaatgataacaaaggttgtgttggtttatcacta 22885506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 22898067 - 22898328
Alignment:
Q  5 gatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctattggag 104  Q
    ||||| |||||||||||||| |||||||| | |||||||||||||||| |||||||||| |||||||||||| ||||||||  || | |||  |||||||    
T  22898067 gatgaaaatccaacatacatactattgtttaaaattggagaaagatctctggtcaatgacaacaaaggttgttttggttta--ac-aacattaattggag 22898163  T
Q  105 ctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatcgattatattc 204  Q
    ||||||||||||| |||          | |||||||| ||||||||||||||||| ||||  |||||||||||||  |||| | ||| | ||  ||   |    
T  22898164 ctaaagtaacatcaatctttttcttttcaccatcatattcaatccatacctgcataggattgccactgaaaagggtcaaattcttgagttgaccattaac 22898263  T
Q  205 atcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
    ||| |||||||||| || ||||||  |||||||||||||||||||||||||||| ||||||||||    
T  22898264 atcataatatcctgcaggagttgatttagctgatttcaaatcattgatatcaataccaacatggt 22898328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 22858250 - 22858527
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggttt------attactagc- 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||      ||||| | |     
T  22858250 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttcgtgaatgataacaaaggtcgtgctggtttaacaacattacaacca 22858349  T
Q  94 --atctattggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctga 191  Q
      ||  ||||||||||| |||||||| ||         |||||||||||| || |||||||||||||| |||||||||||  |||||||||| ||  |||    
T  22858350 aaattaattggagctaatgtaacatcaatatttttcttcactccatcatattctatccatacctgcataggatatccactagaaagggataagtcgttga 22858449  T
Q  192 atcgattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
    |||||  |    |||  || ||||||| || ||||||| ||||||||||||||| |||||| ||||| ||| ||||||    
T  22858450 atcgaccaatagcattatagtatcctgcaggagttgaattagctgatttcaaattattgatgtcaataccagcatggt 22858527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 22805109 - 22805283
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctatt 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||  ||||||||||  || | |||  | |    
T  22805109 tgaagatgagaatccaacatacatactattgttaagaattggagaaagatctttggtcattgataacgaaggtcctgttggttta--ac-aacataaact 22805205  T
Q  101 ggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagg 178  Q
    ||||||||||||||||| |||        |||||||||||| |||||||||||||| || |||| ||||||| |||||    
T  22805206 ggagctaaagtaacatcaatctttttcttcactccatcataatcaatccatacctgtataggatttccactggaaagg 22805283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 22809432 - 22809709
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggttt------att---acta 91  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||      |||   || |    
T  22809432 tgaagatgagaatccaacatacatactagtgttaagaattggagaaagatctttggtgaatgataacaaaggtcgtgttggtttaacaacattaaaacca 22809531  T
Q  92 gcatctattggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctga 191  Q
     |||  ||||||||||||||| |||| |||          | |||||||| ||||||||||| ||||| ||||| ||||||||||||   | || | |||    
T  22809532 acattaattggagctaaagtagcatcaatctttttcttttcaccatcatattcaatccatacatgcataggatagccactgaaaaggctcatattcttga 22809631  T
Q  192 atcgattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
    || ||  ||    ||| |||||||||| || ||||||| |||||||||||||||||||||||||||| |||| |||||    
T  22809632 attgaccattactatcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaatatggt 22809709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 22913465 - 22913578
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctatt 100  Q
    |||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||  || | |||  |||    
T  22913465 tgaagatgagaatccaacatacatactagtgttaagaattgaagaaagatctttgttcaatgataacaaaggttgttttggttta--ac-aacattaatt 22913561  T
Q  101 ggagctaaagtaacatc 117  Q
    |||||||||||||||||    
T  22913562 ggagctaaagtaacatc 22913578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 22826053 - 22826162
Alignment:
Q  5 gatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatctattggag 104  Q
    |||||||||||||||||||| |||||||| | |||||||| ||||||| |||||||||| |||||||||||| ||||||||  || | |||  |||||||    
T  22826053 gatgagaatccaacatacatactattgttcaaaattggaggaagatctctggtcaatgaaaacaaaggttgttttggttta--ac-aacattaattggag 22826149  T
Q  105 ctaaagtaacatc 117  Q
    |||||||||||||    
T  22826150 ctaaagtaacatc 22826162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 22885556 - 22885659
Alignment:
Q  163 atatccactgaaaagggataaatccctgaatcgattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattcca 262  Q
    |||||||||| |||||||||||| |||||||| || ||   |||| |||||||||| || ||||||| |||||||||||||||||||||||||||| |||    
T  22885556 atatccactggaaagggataaattcctgaatccataat---catcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaatacca 22885652  T
Q  263 acatggt 269  Q
    | |||||    
T  22885653 atatggt 22885659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 269
Target Start/End: Original strand, 22913698 - 22913733
Alignment:
Q  234 ctgatttcaaatcattgatatcaattccaacatggt 269  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22913698 ctgatttcaaaccattgatatcaattccaacatggt 22913733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 21150923 - 21150649
Alignment:
Q  1 tgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggtttattactagcatcta-- 98  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||| ||| ||  | | |      
T  21150923 tgaagatgagaatccaacatacatactattgttgagaactggagaaagatctttggtcaatgataacaaaggtcttgctggttttttattaaaaccaaca 21150824  T
Q  99 ----ttggagctaaagtaacatctatcnnnnnnnncactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatc 194  Q
        ||||||||||||||||||  |||          | |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||  ||||||    
T  21150823 ctaattggagctaaagtaacattaatcttcttcttttcaccatcatattcaatccatacatgcataggatatccactgaaaagggataaatcattgaatc 21150724  T
Q  195 gattatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggt 269  Q
     || ||  ||||| ||||| |||| |||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  21150723 catcattatcatcataatagcctgcagaagttgagttagctgatttcaaatcattgatatcaataccaacatggt 21150649  T

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