View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_36 (Length: 268)
Name: NF5961_low_36
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 42551095 - 42550848
Alignment:
| Q |
1 |
cctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccag |
100 |
Q |
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| T |
42551095 |
cctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccag |
42550996 |
T |
|
| Q |
101 |
aaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42550995 |
aaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaa |
42550896 |
T |
|
| Q |
201 |
cgtttggctatcgaatctgcagtactggttggtagaaggttttatagt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42550895 |
cgtttggctatcgaatctgcagtactggttggtagaaggttttatagt |
42550848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 42518990 - 42519182
Alignment:
| Q |
1 |
cctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccag |
100 |
Q |
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||||||||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| |||||| || || |||||||| ||||| |||| |
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| T |
42518990 |
cctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccag |
42519089 |
T |
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| Q |
101 |
aaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaaca |
193 |
Q |
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| T |
42519090 |
agagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaaca |
42519182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1240769 - 1240992
Alignment:
| Q |
1 |
cctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccag |
100 |
Q |
| |
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||||||||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| ||||| ||||| |||||||| ||||| |||| |
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| T |
1240769 |
cctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgagaaaaagaacaccaccag |
1240868 |
T |
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| Q |
101 |
aaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaa |
200 |
Q |
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| T |
1240869 |
agagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgttag |
1240968 |
T |
|
| Q |
201 |
cgtttggctatcgaatctgcagta |
224 |
Q |
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|| || || |||||| ||||||| |
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| T |
1240969 |
tgtctgactgtcgaatttgcagta |
1240992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 18235214 - 18235432
Alignment:
| Q |
13 |
ccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatcatggtga |
112 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
18235214 |
ccaagtaacatacgaccaacaatgagcatccaaacctcttgagcaaagccattcatggcagcaccagcaagaaaaagaacaccaccagaaagcatggtga |
18235313 |
T |
|
| Q |
113 |
gacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatc |
212 |
Q |
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||| ||||||| | |||||||| || |||||||| ||||| | ||||||||||| ||||||||||| || || ||||||||||||||||| || |
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| T |
18235314 |
tacgtcttccaagcactcgagttagccacgacgccccaagagatgcgataagagcagccacgtacaaagaggatgtgaataatgttaacgtttggctgtc |
18235413 |
T |
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| Q |
213 |
gaatctgcagtactggttg |
231 |
Q |
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|||| |||||||||||||| |
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| T |
18235414 |
gaatttgcagtactggttg |
18235432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 41972402 - 41972595
Alignment:
| Q |
1 |
cctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccag |
100 |
Q |
| |
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||||||||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| ||||| ||||| |||||||| ||||| |||| |
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| T |
41972402 |
cctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgagaaaaagaacaccaccag |
41972501 |
T |
|
| Q |
101 |
aaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaa |
194 |
Q |
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| T |
41972502 |
agagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagaggatgtaaacaa |
41972595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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