View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_38 (Length: 263)
Name: NF5961_low_38
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 13283011 - 13283241
Alignment:
| Q |
18 |
gttaggtgcgatatacatcattaatatttttatagatacaaatgttagtatattagtcgttatgtcagtattttattcttcactagagttttatactcga |
117 |
Q |
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| T |
13283011 |
gttaggtgcgatatacatcattaatatttttatagatacaaatgttagtatattagtcgttatgtcactattttgttcttcactagagttttatactcga |
13283110 |
T |
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| Q |
118 |
tgtttcatccttcaaccgagctcgtatcacttgagttactcaattcttgttttacattacttcattctgtatgcatctttatatattttgaagtataata |
217 |
Q |
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| T |
13283111 |
tgtttcatccttcaaccgagctcgtatcacttgagttactcaattcttgttttacattacttgattctgtatgcatctttatatattttgaagtataata |
13283210 |
T |
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| Q |
218 |
tggagttatggacattaattatattgtttat |
248 |
Q |
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| T |
13283211 |
tggagttatggacattaattatattgtttat |
13283241 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 26533892 - 26533843
Alignment:
| Q |
42 |
tatttttatagatacaaatgttagtatattagtcgttatgtcagtatttt |
91 |
Q |
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| T |
26533892 |
tatttttttatatccaaatgttagtatattagttgttatgttagtatttt |
26533843 |
T |
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