View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5961_low_40 (Length: 261)

Name: NF5961_low_40
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5961_low_40
NF5961_low_40
[»] chr1 (10 HSPs)
chr1 (10-244)||(2958833-2959068)
chr1 (159-225)||(2960182-2960248)
chr1 (1-47)||(34475898-34475944)
chr1 (1-46)||(20808947-20808992)
chr1 (1-45)||(4194767-4194811)
chr1 (160-199)||(2940993-2941032)
chr1 (1-42)||(1270175-1270216)
chr1 (1-46)||(29095676-29095721)
chr1 (1-46)||(42480121-42480166)
chr1 (1-45)||(31032851-31032895)
[»] chr4 (8 HSPs)
chr4 (1-48)||(24683074-24683121)
chr4 (1-48)||(18375544-18375591)
chr4 (1-47)||(4098535-4098581)
chr4 (1-52)||(26179364-26179415)
chr4 (1-47)||(47281690-47281736)
chr4 (1-46)||(17847691-17847736)
chr4 (1-46)||(41633217-41633262)
chr4 (3-51)||(41878316-41878364)
[»] chr2 (7 HSPs)
chr2 (1-47)||(28429280-28429326)
chr2 (1-48)||(16058527-16058574)
chr2 (1-46)||(13685993-13686038)
chr2 (1-47)||(28716493-28716539)
chr2 (1-43)||(42263834-42263876)
chr2 (1-47)||(45093299-45093345)
chr2 (1-37)||(41465053-41465089)
[»] chr8 (3 HSPs)
chr8 (1-46)||(41322529-41322574)
chr8 (5-46)||(1196507-1196548)
chr8 (8-47)||(4851732-4851771)
[»] chr7 (4 HSPs)
chr7 (1-46)||(22326858-22326903)
chr7 (1-47)||(17611841-17611887)
chr7 (5-43)||(27425911-27425949)
chr7 (2-47)||(19479440-19479485)
[»] chr5 (6 HSPs)
chr5 (1-45)||(11739373-11739417)
chr5 (2-47)||(29223464-29223509)
chr5 (1-46)||(32891174-32891219)
chr5 (1-47)||(228022-228068)
chr5 (1-43)||(8692511-8692553)
chr5 (1-42)||(4391999-4392040)
[»] chr3 (13 HSPs)
chr3 (1-45)||(50613028-50613072)
chr3 (1-46)||(31788305-31788350)
chr3 (1-49)||(544631-544679)
chr3 (2-50)||(43203244-43203292)
chr3 (2-46)||(45166226-45166270)
chr3 (1-48)||(521918-521965)
chr3 (1-48)||(52546740-52546787)
chr3 (1-47)||(34624630-34624675)
chr3 (1-47)||(36517513-36517559)
chr3 (1-46)||(1561409-1561454)
chr3 (1-46)||(20912167-20912212)
chr3 (1-46)||(23643133-23643178)
chr3 (1-46)||(38176543-38176588)
[»] scaffold0188 (1 HSPs)
scaffold0188 (9-47)||(15977-16015)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-43)||(492669-492711)
[»] scaffold0132 (2 HSPs)
scaffold0132 (1-45)||(537-581)
scaffold0132 (1-45)||(8497-8541)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 2958833 - 2959068
Alignment:
Q  10 ttcttgatgttattttcctaaagatatagcattgctctagtaacatactaccatcatatataatttcttt-attgaacggagaatgaagtgatacttaat 108  Q
    |||||||||||||||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2958833 ttcttgatgttatttttctagagatatagcattgctctcctaacatactaccatcatatataatttcttttattgaacggagaatgaagtgatacttaat 2958932  T
Q  109 agcccataaatattaactccaatattacataatgacacaatatcgcaacacttacaaatcatactgaaaattctatgaagtccatttatgagattcttaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2958933 agcccataaatattaactccaatattacataatgacacaatatcgcaacacttacaaatcatactgaaaattctatgaagtccatttatgagtttcttaa 2959032  T
Q  209 agaaaaatatttctcaaaaattacaacatttataga 244  Q
    |||||||||||||||||| |||||||||||||||||    
T  2959033 agaaaaatatttctcaaagattacaacatttataga 2959068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 2960248 - 2960182
Alignment:
Q  159 cttacaaatcatactgaaaattctatgaagtccatttatgagattcttaaagaaaaatatttctcaa 225  Q
    ||||| |||| ||||||||||||||||||||||||| |||| | | || ||||||||||||||||||    
T  2960248 cttacgaatcttactgaaaattctatgaagtccattaatgacaattttcaagaaaaatatttctcaa 2960182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34475944 - 34475898
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  34475944 cttgaagaattcttgatgttatttttctagagatatagcattgctct 34475898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20808992 - 20808947
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  20808992 cttgaagaattcttgatgttatttttctagagatatagcattgctc 20808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4194811 - 4194767
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgct 45  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||    
T  4194811 cttgaagaattcttgatgttatttttctagagatatagcattgct 4194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 2940993 - 2941032
Alignment:
Q  160 ttacaaatcatactgaaaattctatgaagtccatttatga 199  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  2940993 ttacaaatcatactgaaaattctatgaagaccatttatga 2941032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1270216 - 1270175
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcatt 42  Q
    ||||||||||||||||||||||||| ||| ||||||||||||    
T  1270216 cttgaagaattcttgatgttatttttctagagatatagcatt 1270175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29095676 - 29095721
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  29095676 cttgaagaattcttgatgttatttttctagagatataacattgctc 29095721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42480166 - 42480121
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    |||||||||||||||||||||||||  || ||||||| ||||||||    
T  42480166 cttgaagaattcttgatgttatttttgtagagatataacattgctc 42480121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31032851 - 31032895
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgct 45  Q
    |||||||||||||||||| |||||| ||| ||||||| |||||||    
T  31032851 cttgaagaattcttgatgatatttttctagagatataacattgct 31032895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24683121 - 24683074
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctcta 48  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24683121 cttgaagaattcttgatgttatttttctagagatatagcattgctcta 24683074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18375544 - 18375591
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctcta 48  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  18375544 cttgaagaattcttgatgttatttttctagagatataacattgctcta 18375591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4098535 - 4098581
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  4098535 cttgaagaattcttgatgttatttttctagagatataacattgctct 4098581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26179364 - 26179415
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctctagtaa 52  Q
    |||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||    
T  26179364 cttgaagaattcttaatgttatttttctagagatataacattgctcttgtaa 26179415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47281690 - 47281736
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||||||||||||||||| ||| | ||||| |||||||||    
T  47281690 cttgaagaattcttgatgttatttttctagacatataacattgctct 47281736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17847691 - 17847736
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||| || |||||||||| ||| ||||||||||||||||    
T  17847691 cttgaagaattttttatgttatttttctagagatatagcattgctc 17847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41633262 - 41633217
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    |||||||||||||| |||||||||| ||| ||||||| ||||||||    
T  41633262 cttgaagaattcttaatgttatttttctagagatataacattgctc 41633217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 41878364 - 41878316
Alignment:
Q  3 tgaagaattcttgatgttattttcctaaagatatagcattgctctagta 51  Q
    |||||||||| |||||||||||| ||| ||||| | |||||||||||||    
T  41878364 tgaagaattcatgatgttatttttctatagatacaacattgctctagta 41878316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28429326 - 28429280
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  28429326 cttgaagaattcttgatattatttttctaaagatatagcattgctct 28429280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16058527 - 16058574
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctcta 48  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  16058527 cttgaagaattcttaatgttatttttctagagatatagcattgctcta 16058574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13686038 - 13685993
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||    
T  13686038 cttgaaaaattcttgatgttatttttctagagatatagcattgctc 13685993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28716493 - 28716539
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||||||||||| ||||| ||| ||||||| |||||||||    
T  28716493 cttgaagaattcttgatgtcatttttctagagatataacattgctct 28716539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42263876 - 42263834
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattg 43  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||    
T  42263876 cttgaagaattcttgatgttatttttctagagatataacattg 42263834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45093299 - 45093345
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||| ||||||||||||| ||| |||||||||| ||||||    
T  45093299 cttgaagaattattgatgttatttttctagagatatagcactgctct 45093345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41465053 - 41465089
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatata 37  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  41465053 cttgaagaattcttgatgttatttttctagagatata 41465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41322574 - 41322529
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  41322574 cttgaagaattcttgatgttatttttttaaagatatagcattgctc 41322529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 1196548 - 1196507
Alignment:
Q  5 aagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  1196548 aagaattcttgatgttatttttctagagatatagcattgctc 1196507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 4851771 - 4851732
Alignment:
Q  8 aattcttgatgttattttcctaaagatatagcattgctct 47  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  4851771 aattcttgatgttatttttctagagatatagcattgctct 4851732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22326903 - 22326858
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||    
T  22326903 cttgaagaattcttgatgttatttttctaaagatatagcactgctc 22326858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17611887 - 17611841
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||    
T  17611887 cttgaagaattcttgatgttatttttctagcgatatagcattgctct 17611841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 27425911 - 27425949
Alignment:
Q  5 aagaattcttgatgttattttcctaaagatatagcattg 43  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  27425911 aagaattcttgatgttatttttctaaagatatagcattg 27425949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 19479485 - 19479440
Alignment:
Q  2 ttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||    
T  19479485 ttgaagaatttttgatgttatttttctagagatatagcattgctct 19479440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11739373 - 11739417
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgct 45  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||    
T  11739373 cttgaagaattcttgatgttatttttctaaagatataacattgct 11739417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 29223509 - 29223464
Alignment:
Q  2 ttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||    
T  29223509 ttgaagaattcttgatattatttttctaaagatatagcactgctct 29223464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32891219 - 32891174
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  32891219 cttgaagaattcttgatgttatttttctagagatataacattgctc 32891174  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 228068 - 228022
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    |||||| |||||||||||||||||| ||| ||||||| |||||||||    
T  228068 cttgaaaaattcttgatgttatttttctagagatatatcattgctct 228022  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8692553 - 8692511
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattg 43  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||    
T  8692553 cttgaagaattcttgatgttatttttctagagatataacattg 8692511  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4391999 - 4392040
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcatt 42  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||    
T  4391999 cttgaagaattcttgatgttatttttctagagatataacatt 4392040  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50613028 - 50613072
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgct 45  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||    
T  50613028 cttgaagaattcttgatgttatttttctagagatatagcattgct 50613072  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31788350 - 31788305
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  31788350 cttgaagaattcttgatgttatttttctagagatatatcattgctc 31788305  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 544679 - 544631
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctctag 49  Q
    ||||||||||||||| ||||||||| ||| |||||||| ||||||||||    
T  544679 cttgaagaattcttggtgttatttttctagagatataggattgctctag 544631  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 43203292 - 43203244
Alignment:
Q  2 ttgaagaattcttgatgttattttcctaaagatatagcattgctctagt 50  Q
    ||||||||||||||||||||||||  || | ||||||||||||||||||    
T  43203292 ttgaagaattcttgatgttatttttttagaaatatagcattgctctagt 43203244  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 45166270 - 45166226
Alignment:
Q  2 ttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||||    
T  45166270 ttgaagaattcttgatgttatttttctagagatataacattgctc 45166226  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 521918 - 521965
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctcta 48  Q
    ||||||||||||||||||||||||  ||| | ||||||||||||||||    
T  521918 cttgaagaattcttgatgttatttatctagatatatagcattgctcta 521965  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 52546787 - 52546740
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctcta 48  Q
    ||||||||||| ||||||||||||| ||||||||||| |||| |||||    
T  52546787 cttgaagaatttttgatgttatttttctaaagatatatcattactcta 52546740  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34624630 - 34624675
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||||    
T  34624630 cttgaagaattctt-atgttatttttctagagatatagcattgctct 34624675  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36517559 - 36517513
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||||||||||||||||  ||| | |||||||||||||||    
T  36517559 cttgaagaattcttgatgttatttgtctagatatatagcattgctct 36517513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1561409 - 1561454
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||||||||||||||||| ||| ||||||| || |||||    
T  1561409 cttgaagaattcttgatgttatttttctagagatataacactgctc 1561454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20912212 - 20912167
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    |||||||||||||||||||||||||  ||||||||| | |||||||    
T  20912212 cttgaagaattcttgatgttatttttttaaagatattggattgctc 20912167  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23643133 - 23643178
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    ||||||||||||||||||||||||| ||| ||||| | ||||||||    
T  23643133 cttgaagaattcttgatgttatttttctagagatacaacattgctc 23643178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38176543 - 38176588
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgctc 46  Q
    |||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  38176543 cttgaagaattcttgatgatatttttctagagatataacattgctc 38176588  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 15977 - 16015
Alignment:
Q  9 attcttgatgttattttcctaaagatatagcattgctct 47  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  15977 attcttgatgttatttttctaaagatataacattgctct 16015  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 492711 - 492669
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattg 43  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||    
T  492711 cttgaagaattcttgatgttatttttctagagatataacattg 492669  T

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Target: scaffold0132 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 581 - 537
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgct 45  Q
    |||||||||||||||||||||||||  || |||||||| ||||||    
T  581 cttgaagaattcttgatgttatttttttatagatataggattgct 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8541 - 8497
Alignment:
Q  1 cttgaagaattcttgatgttattttcctaaagatatagcattgct 45  Q
    |||||||||||||||||||||||||  || |||||||| ||||||    
T  8541 cttgaagaattcttgatgttatttttttatagatataggattgct 8497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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