View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5961_low_41 (Length: 259)
Name: NF5961_low_41
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_41 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 45824567 - 45824809
Alignment:
| Q |
17 |
agtaactgataaatgcaagaagacagtctttttctttnnnnnnnnntgcaagaagccaatcacgtggggagaaaacgtgaccagaacaagcgttgacatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45824567 |
agtaactgataaatgcaagaagacagtctttttctttcaaaaaaaatgcaagaagccaatcacgtggggagaaaacgtgaccagaacaagcgttgacatg |
45824666 |
T |
|
| Q |
117 |
ggaacggaacagtgagcagttgatgtccttaaaatgaaattaaggagataaaaatatggatacgatgattagtgcacagatcccaagcaatattatccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45824667 |
ggaacggaacagtgagcagttgatgtccttaaaatgaaattaaggagataaaaatatggatacgatgattagtgcacagatcccaagcaatattatccaa |
45824766 |
T |
|
| Q |
217 |
ctaaattgcatttaaatttattaagctaaactctactaccatg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45824767 |
ctaaattgcatttaaatttattaagctaaactctactaccatg |
45824809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University