View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_44 (Length: 251)
Name: NF5961_low_44
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45824912 - 45825141
Alignment:
| Q |
1 |
atgtcacgtgatgtaccatctctcatcaggtttctcaatattctgaagcatggaaattgatctttttagctgtgccgtcaaaaacgggattcnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45824912 |
atgtcacgtgatgtaccatctctcatcaggtttctcaatattctgaagcatggaaattgatctttttagctgtgccgtcaaatacgggattcttttttt- |
45825010 |
T |
|
| Q |
101 |
nnnnnnnnaaagggtctcttagattaaacaatgttattgatcatcaaaaaataattaaacaatgttgttgatcatcaacaataattaaacaatgttatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45825011 |
--------aaagggtctcttagattaaacaatgttattgatca---aaaaataattaaacaatgttgttgatcatcaacaataattaaacaatgttatgt |
45825099 |
T |
|
| Q |
201 |
atgtttttgttctttactttctctacatgctttgccctatgc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45825100 |
atgtttttgttctttactttctctacatgctttgccctatgc |
45825141 |
T |
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