View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_47 (Length: 249)
Name: NF5961_low_47
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 31369256 - 31369333
Alignment:
| Q |
26 |
gcaagtaaggaggcttgagcccaattttcaataaaccacactcagtttgatggaaatttatttgagaatatgtatgct |
103 |
Q |
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| T |
31369256 |
gcaagtaaggaggcttgagcccaattttcaataaaccacactcagtttgatggaaatttatttgagaatatgtatgct |
31369333 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 31369425 - 31369479
Alignment:
| Q |
195 |
aagaactttatacttgtatatagtaaataaggcaataaacaacttacaggacagt |
249 |
Q |
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| T |
31369425 |
aagaactttatacttgtatatagtaaataaggcaataaacaacttacaggacagt |
31369479 |
T |
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