View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_54 (Length: 235)
Name: NF5961_low_54
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26594359 - 26594140
Alignment:
| Q |
1 |
taaatttgttttgtaggttggtgagggatacaattagcaggtggacaaaagcaaaggattgcaataagatatcatgctatagttaaaaatccatcagtcc |
100 |
Q |
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| T |
26594359 |
taaatttgttttgtaggttggtgagggatacaattagcagggggacaaaagcaaaggattgcaataagatatcatgctatagttaaaaatccatcagtcc |
26594260 |
T |
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| Q |
101 |
ttttattagacgaagcaactagtgctttggatgcagagattgagaaaagtatataagaacctcttgttatagtgtcatgattggtagaacaacttcgata |
200 |
Q |
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| T |
26594259 |
ttttattagacgaagcacttagtgctttgaatgcagagtttgagaaaagtatataagaacctcttgttatagtgtcatgattggtagaacaacttcgata |
26594160 |
T |
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| Q |
201 |
gctattgttgaaggagggag |
220 |
Q |
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| T |
26594159 |
gctattgttgaaggagggag |
26594140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 27727380 - 27727564
Alignment:
| Q |
9 |
ttttgtaggttggtgaggga----tacaattagcaggtggacaaaagcaaaggattgcaataagatatcatgctatagttaaaaatccatcagtcctttt |
104 |
Q |
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| T |
27727380 |
ttttgtaggttggtgagagaggaatacaattatctgggggacaaaagcagcgaattgcaata---tctcgtgctatagttaaaaatccatcaatcctttt |
27727476 |
T |
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| Q |
105 |
attagacgaagcaactagtgctttggatgcagagattgagaaaagtatataagaacctcttgttatagtgtcatgattggtagaacaact |
194 |
Q |
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| T |
27727477 |
attagatgaagcaactagtgctttggatgccgagtctgagaaaagtgtacaagaagctcttg--atcatgtcatgattggtagaacaact |
27727564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 12519953 - 12520061
Alignment:
| Q |
23 |
gagggatacaattagcaggtggacaaaagcaaaggattgcaataagatatcatgctatagttaaaaatccatcagtccttttattagacgaagcaactag |
122 |
Q |
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| T |
12519953 |
gagggatacaactatcaggtggacagaagcaaaggattgcgata---tctcgggcgatcgtgaagaatccatcgatccttttattagatgaagcaactag |
12520049 |
T |
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| Q |
123 |
tgctttggatgc |
134 |
Q |
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| T |
12520050 |
tgctttggatgc |
12520061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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