View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5961_low_60 (Length: 222)

Name: NF5961_low_60
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5961_low_60
NF5961_low_60
[»] chr2 (11 HSPs)
chr2 (1-206)||(45329630-45329835)
chr2 (100-203)||(1648008-1648111)
chr2 (99-205)||(8561060-8561166)
chr2 (100-194)||(37520591-37520685)
chr2 (100-205)||(16290743-16290848)
chr2 (109-194)||(11992916-11993001)
chr2 (136-192)||(23766906-23766962)
chr2 (136-192)||(23796099-23796155)
chr2 (129-205)||(28218494-28218570)
chr2 (169-205)||(3978564-3978600)
chr2 (162-205)||(42010633-42010676)
[»] chr1 (18 HSPs)
chr1 (109-202)||(4001855-4001948)
chr1 (100-205)||(49350463-49350568)
chr1 (100-205)||(52920979-52921084)
chr1 (100-200)||(32079305-32079405)
chr1 (109-205)||(49527427-49527523)
chr1 (129-205)||(8670797-8670873)
chr1 (100-194)||(51850761-51850855)
chr1 (129-193)||(9599937-9600001)
chr1 (132-205)||(6985605-6985676)
chr1 (130-194)||(52463090-52463154)
chr1 (109-194)||(1290193-1290278)
chr1 (129-194)||(6039615-6039680)
chr1 (109-203)||(15424503-15424595)
chr1 (129-190)||(52815037-52815098)
chr1 (128-194)||(19821948-19822014)
chr1 (120-205)||(47876937-47877023)
chr1 (129-194)||(40228321-40228386)
chr1 (130-204)||(51903722-51903796)
[»] chr8 (9 HSPs)
chr8 (99-197)||(16008437-16008535)
chr8 (100-189)||(4061809-4061898)
chr8 (129-204)||(15218274-15218349)
chr8 (132-191)||(3801865-3801924)
chr8 (129-197)||(35323900-35323968)
chr8 (118-187)||(29520509-29520578)
chr8 (118-200)||(35249795-35249881)
chr8 (112-205)||(30453841-30453935)
chr8 (130-205)||(23491981-23492057)
[»] chr3 (8 HSPs)
chr3 (99-205)||(52136314-52136420)
chr3 (100-205)||(51450756-51450861)
chr3 (112-205)||(31566251-31566344)
chr3 (109-204)||(9256268-9256363)
chr3 (100-205)||(7023147-7023252)
chr3 (159-206)||(33123866-33123913)
chr3 (148-204)||(21104201-21104257)
chr3 (129-194)||(27215624-27215689)
[»] chr5 (8 HSPs)
chr5 (100-203)||(2078532-2078635)
chr5 (109-204)||(32489110-32489205)
chr5 (112-194)||(39668782-39668864)
chr5 (118-205)||(11069355-11069442)
chr5 (136-205)||(3292666-3292735)
chr5 (100-184)||(10293688-10293772)
chr5 (130-194)||(22703828-22703892)
chr5 (155-194)||(6520932-6520971)
[»] chr6 (6 HSPs)
chr6 (100-205)||(20430559-20430664)
chr6 (110-205)||(6079585-6079680)
chr6 (145-189)||(6056338-6056382)
chr6 (133-188)||(26489374-26489429)
chr6 (129-194)||(2544931-2544996)
chr6 (140-191)||(22693196-22693247)
[»] scaffold0279 (1 HSPs)
scaffold0279 (99-205)||(18382-18488)
[»] scaffold0001 (1 HSPs)
scaffold0001 (132-205)||(440116-440189)
[»] chr4 (8 HSPs)
chr4 (112-193)||(54529556-54529636)
chr4 (118-205)||(27453156-27453241)
chr4 (132-194)||(38475067-38475129)
chr4 (129-194)||(16000259-16000320)
chr4 (142-205)||(31164579-31164642)
chr4 (132-191)||(49359514-49359572)
chr4 (129-205)||(883520-883596)
chr4 (129-205)||(42232071-42232147)
[»] scaffold0024 (1 HSPs)
scaffold0024 (109-205)||(48249-48345)
[»] chr7 (4 HSPs)
chr7 (131-204)||(46833158-46833228)
chr7 (129-185)||(30089119-30089175)
chr7 (141-204)||(36232115-36232176)
chr7 (112-207)||(26044510-26044605)
[»] scaffold0245 (1 HSPs)
scaffold0245 (109-194)||(16598-16683)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 45329835 - 45329630
Alignment:
Q  1 agtaaatttagttgaatctaaagtcccctctatattcggagaatttgaagtgaggatattgtttgttgcctttcaaatattttaaattgttgtatgctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45329835 agtaaatttagttgaatctaaagtcccctctatattcggagaatttgaagtgaggatattgtttgttgcctttcaaatattttaaattgttgtatgctaa 45329736  T
Q  101 atcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||    
T  45329735 atcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttatcgaatctctatgacaaagatca 45329636  T
Q  201 aatact 206  Q
    ||||||    
T  45329635 aatact 45329630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 1648008 - 1648111
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| ||| |||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  1648008 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggacc 1648107  T
Q  200 aaat 203  Q
    ||||    
T  1648108 aaat 1648111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 8561166 - 8561060
Alignment:
Q  99 aaatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagac 198  Q
    ||||| ||| |||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||    
T  8561166 aaatcctgccaaggccggtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatccctatgacatggac 8561067  T
Q  199 caaatac 205  Q
    |||||||    
T  8561066 caaatac 8561060  T

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Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 37520591 - 37520685
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||| ||| |||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37520591 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacat 37520685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 16290743 - 16290848
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| ||| |||||||| |||||||| | ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  16290743 aatcctgccaaggccggtcccaagcccgggtaaaaggaaagggttgtgttaggcctcgatagccaacgtaaaactttgtcgaatctctatgacatggacc 16290842  T
Q  200 aaatac 205  Q
    ||||||    
T  16290843 aaatac 16290848  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 11992916 - 11993001
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||||||| |||||||| | ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  11992916 aaggccggtcccaagcccgggtaaaagaagagggttgtgttaggcctcgacagccaacataaaactttgtcgaatctctatgacat 11993001  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 23766962 - 23766906
Alignment:
Q  136 gagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgac 192  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23766962 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 23766906  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 23796155 - 23796099
Alignment:
Q  136 gagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgac 192  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23796155 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 23796099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 28218570 - 28218494
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||||||||||||||||||||  || || | |||||||||| |||||| ||||| || ||||| ||||||||||    
T  28218570 gtaaaaggagagggttgtgttaggcttcaacggtcaacgtaaaattttgtctaatctttacgacatggaccaaatac 28218494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 3978600 - 3978564
Alignment:
Q  169 aaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3978600 aaaactttgtcgaatctctatgacatggaccaaatac 3978564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 42010676 - 42010633
Alignment:
Q  162 ccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||||||||||||||||||| |||||||||  |||||||||    
T  42010676 ccaacgtaaaactttgtcgaatccctatgacatgtaccaaatac 42010633  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 4001855 - 4001948
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaa 202  Q
    ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4001855 aaggccggccccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggaccaaa 4001948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 49350568 - 49350463
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| ||| |||||||| ||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  49350568 aatcctgccaaggccggtcccaagcccaggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggacc 49350469  T
Q  200 aaatac 205  Q
    ||||||    
T  49350468 aaatac 49350463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 52920979 - 52921084
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| ||| |||||||| |||||||| | |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||    
T  52920979 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggccttgacagccaacataaaactttgtcgaatctctatgacatggacc 52921078  T
Q  200 aaatac 205  Q
    ||||||    
T  52921079 aaatac 52921084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 32079305 - 32079405
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| ||| |||||||| | |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  32079305 aatcctgccaaggccggtctcaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggacc 32079404  T
Q  200 a 200  Q
    |    
T  32079405 a 32079405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 49527523 - 49527427
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    |||||||| |||||||  | ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  49527523 aaggccggtcccaagctcgggtaaaaggagaggattgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatggaccaaatac 49527427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 8670873 - 8670797
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  8670873 gtaaaaggagagggttgtgttaggcctcgacagccaatgtaaaactttgtcgaatctctataacatggaccaaatac 8670797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 51850761 - 51850855
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||| ||| |||||| | |||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||    
T  51850761 aatcctgccaaggccagtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacatccaacataaaacttcgtcgaatctctatgacat 51850855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 9599937 - 9600001
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgaca 193  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  9599937 gtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcggatctctatgaca 9600001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 6985676 - 6985605
Alignment:
Q  132 aaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  6985676 aaaggagagggttgtgttaggcc--gacagccaacgtaaaactttgtcgaatctctatgacatggacaaaatac 6985605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 52463154 - 52463090
Alignment:
Q  130 taaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    ||||||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||||||    
T  52463154 taaaaggagagggttgtgttagacctcgactgccaacttaaaactttgtcgaatctctatgacat 52463090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 1290278 - 1290193
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||||||| |||||||| | ||||||  |||||||||||| ||| || |||||||||||||||||||| | |||||||||||||||    
T  1290278 aaggccggtcccaagcccgggtaaaaaaagagggttgtgtcaggccttgacagccaacgtaaaactttttagaatctctatgacat 1290193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 6039615 - 6039680
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    ||||||||||| |||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  6039615 gtaaaaggagaaggttgtattaggcctcaacagccaacgtaaaactttgttgaatctctatgacat 6039680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 15424595 - 15424503
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaat 203  Q
    |||||||| |||||||| || |||||||||||| |||||||||| | ||||| |||||||||||||||||| ||||||||| |||| || |||||    
T  15424595 aaggccggtcccaagccgga-taaaaggagagg-ttgtgttaggccacgacaaccaacgtaaaactttgtcaaatctctataacatggatcaaat 15424503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 52815037 - 52815098
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatg 190  Q
    |||||||||||||||||||||||| || |||| ||||||||||||||||| || ||||||||    
T  52815037 gtaaaaggagagggttgtgttaggccttgacaaccaacgtaaaactttgttgactctctatg 52815098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 19821948 - 19822014
Alignment:
Q  128 agtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||||||| |||||||||||||||||||| ||| |||| | |||| ||||||| |||||||||||||    
T  19821948 agtaaaagtagagggttgtgttaggtctcaacaaccaatgcaaaattttgtcgtatctctatgacat 19822014  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 47876937 - 47877023
Alignment:
Q  120 caagcctgagtaaaaggagagggttgtgttaggtc-tcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||||  |||||||||||| ||||||||||   ||||||||||||  | || ||||||||||||||||||||| || |||||||    
T  47876937 caagcctggataaaaggagaggattgtgttaggcagtcgacagccaacacagaaatttgtcgaatctctatgacatggatcaaatac 47877023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 40228321 - 40228386
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    ||||||||| ||||||||| ||||   ||||| ||||||||||||||| |||||||| ||||||||    
T  40228321 gtaaaaggatagggttgtgctaggcaacgacaaccaacgtaaaactttttcgaatctttatgacat 40228386  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 51903796 - 51903722
Alignment:
Q  130 taaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaata 204  Q
    |||||||||||| ||||||||| | | |||||||||| |||||||||||  || || |||||| | |||||||||    
T  51903796 taaaaggagaggtttgtgttagattttgacagccaacataaaactttgttaaaactttatgacgtggaccaaata 51903722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 16008535 - 16008437
Alignment:
Q  99 aaatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacataga 197  Q
    ||||| ||| |||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  16008535 aaatcctgccaaggccggtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacataga 16008437  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 4061809 - 4061898
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctat 189  Q
    |||| ||| |||||||| ||||| || | |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  4061809 aatcctgccaaggccggtcccaaacccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcaaatctctat 4061898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 15218349 - 15218274
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaata 204  Q
    |||||||||||||||||||||| | ||||| || |||||||||| ||||||||||||||||||||| |||||||||    
T  15218349 gtaaaaggagagggttgtgttaagcctcgatagtcaacgtaaaattttgtcgaatctctatgacatggaccaaata 15218274  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 3801865 - 3801924
Alignment:
Q  132 aaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatga 191  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  3801865 aaaggagagggctgtgttaggtctcgacaaccaacgtaaaactttgttgaatctctatga 3801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 35323900 - 35323968
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacataga 197  Q
    ||||||| ||| ||||| || ||| ||||||||||||| ||||| ||||||||||||||||||||||||    
T  35323900 gtaaaagaagacggttgggtcaggcctcgacagccaacttaaaattttgtcgaatctctatgacataga 35323968  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 29520509 - 29520578
Alignment:
Q  118 cccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctct 187  Q
    |||||||| | |||||||||||||||||||||||| ||| ||| ||||||||||||| ||| ||| ||||    
T  29520509 cccaagcccgggtaaaaggagagggttgtgttaggcctctacaaccaacgtaaaactctgttgaacctct 29520578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 35249795 - 35249881
Alignment:
Q  118 cccaagcctgagtaaaaggagagggttgtgttaggtctcgacag----ccaacgtaaaactttgtcgaatctctatgacatagacca 200  Q
    |||||||| | ||||||| ||||||||||| |||| ||||||||    ||||| |||||||||||||||||||||| |||| |||||    
T  35249795 cccaagcccgcgtaaaagaagagggttgtgataggcctcgacagacaaccaacataaaactttgtcgaatctctataacatggacca 35249881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 30453935 - 30453841
Alignment:
Q  112 gccggccccaagcctgagtaaaaggagagggttgtgttaggtc-tcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||| |||||||| |  ||||| |||||||||||||||||   | |||| |||||||||||||| ||||||||||| || ||| || |||||||    
T  30453935 gccggtcccaagcccggataaaaagagagggttgtgttaggcagttgacaaccaacgtaaaacttagtcgaatctctctgtcatggatcaaatac 30453841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 23492057 - 23491981
Alignment:
Q  130 taaaaggagagggttgtgttagg-tctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||||||| |||||||||||   || ||| |||||| |||||||||| |||| |||||||||| || |||||||    
T  23492057 taaaaggagagagttgtgttaggaagtcaacaaccaacggaaaactttgttgaatttctatgacatggatcaaatac 23491981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 52136314 - 52136420
Alignment:
Q  99 aaatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagac 198  Q
    ||||| ||| |||||||| |||||||| | |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||    
T  52136314 aaatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggccttgatagccaacgtaaaactttgtcgaatctctatgacatagac 52136413  T
Q  199 caaatac 205  Q
    |||||||    
T  52136414 caaatac 52136420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 51450861 - 51450756
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| ||| |||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||    
T  51450861 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatatctatggcatggacc 51450762  T
Q  200 aaatac 205  Q
    ||||||    
T  51450761 aaatac 51450756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 31566344 - 31566251
Alignment:
Q  112 gccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||| |||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  31566344 gccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtagaactttgtagaatctctatgacatggaccaaatac 31566251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 9256268 - 9256363
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaata 204  Q
    ||||||||||| ||||  | |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||    
T  9256268 aaggccggccctaagctcgggtaaaaggagagggttgtgttaggcctcaacagccaacgtaaaattttgtcgaatctctatggcatagaccaaata 9256363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 7023147 - 7023252
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| |||||||| ||| ||||||||   |||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||    
T  7023147 aatcctgctaaggtcggtcccaagcccaggtaaaaggagagggttgtgttaggcctcaacagccaacgtaaaactttatcaaatctctatgacatggacc 7023246  T
Q  200 aaatac 205  Q
    | ||||    
T  7023247 agatac 7023252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 33123913 - 33123866
Alignment:
Q  159 cagccaacgtaaaactttgtcgaatctctatgacatagaccaaatact 206  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||    
T  33123913 cagccaacgtaaaactttgtcgaatccctatgacatcgaccaaatact 33123866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 21104257 - 21104201
Alignment:
Q  148 ttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaata 204  Q
    ||||| ||||||| |||| |||||| ||||||||||||||||||| | |||||||||    
T  21104257 ttaggcctcgacatccaatgtaaaattttgtcgaatctctatgacttggaccaaata 21104201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 27215689 - 27215624
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||||||| ||||||||||| ||| ||| | |  |||||||||||||||| | |||||||||||||    
T  27215689 gtaaaaggtgagggttgtgtcaggcctcaataagcaacgtaaaactttgttgtatctctatgacat 27215624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 2078635 - 2078532
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| ||| |||||||| |||||||| |  ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||    
T  2078635 aatcctgccaaggccggtcccaagcccggataaaaggagagggttgtgttaggcctcgacagccaaagtaaaactttgtcgaatctctatgacatggacc 2078536  T
Q  200 aaat 203  Q
    ||||    
T  2078535 aaat 2078532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 32489110 - 32489205
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaata 204  Q
    ||||||||  ||||||  |||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  32489110 aaggccggttccaagctcgagtaaaaggagagggttgtgttagacctcgacagtcaacgtaaaactttgtcgaatccctatgacatggaccaaata 32489205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 39668864 - 39668782
Alignment:
Q  112 gccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    ||||| |||||||| | |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  39668864 gccggtcccaagcccgggtaaaaggtgagggttgtgttagtcctcgacagccaacgtaaaactttgtcgaatctctatgacat 39668782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 11069442 - 11069355
Alignment:
Q  118 cccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    |||||||| | |||||||||||| ||||||||||| ||| ||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  11069442 cccaagcccgggtaaaaggagagcgttgtgttaggcctcaacaaccaacgcaaaactttgtcgaatctctatgacatggaccaaatac 11069355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 3292666 - 3292735
Alignment:
Q  136 gagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||  |||||||||    
T  3292666 gagagggttgtgttaggcctcaacagccaacataaaactttgtcgaatcactatgacatgaaccaaatac 3292735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 10293772 - 10293688
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatc 184  Q
    |||| ||| |||||||| ||||| |  | |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  10293772 aatcctgccaaggccggtcccaaactcgggtaaaaggagagggttgtgttaggcctcgacatgcaacgtaaaactttgtcgaatc 10293688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 22703892 - 22703828
Alignment:
Q  130 taaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    ||||||||||||||||||||||  |||||||||||||  ||||||||||||||| ||||| ||||    
T  22703892 taaaaggagagggttgtgttagacctcgacagccaacacaaaactttgtcgaatttctataacat 22703828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 6520932 - 6520971
Alignment:
Q  155 tcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  6520932 tcgacagtcaacgtaaaactttgtcgaatctctatgacat 6520971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 20430664 - 20430559
Alignment:
Q  100 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagacc 199  Q
    |||| ||| |||||||| |||||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||    
T  20430664 aatcctgccaaggccggtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatgaacc 20430565  T
Q  200 aaatac 205  Q
    ||||||    
T  20430564 aaatac 20430559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 205
Target Start/End: Original strand, 6079585 - 6079680
Alignment:
Q  110 aggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||| |||||||| | ||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  6079585 aggccggtcccaagcccgggtaaaaggagagggttgcgttaggcctcgacagtcaacgtaaaactttgtcgaatctctatgacatggaccacatac 6079680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 6056382 - 6056338
Alignment:
Q  145 gtgttaggtctcgacagccaacgtaaaactttgtcgaatctctat 189  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  6056382 gtgttaggtctcgacagccaacgtaaaactttatcaaatctctat 6056338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 26489374 - 26489429
Alignment:
Q  133 aaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctcta 188  Q
    |||||||||||||||||||  ||||||| ||||||||||| ||||||| |||||||    
T  26489374 aaggagagggttgtgttagtcctcgacaaccaacgtaaaattttgtcgcatctcta 26489429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 2544996 - 2544931
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    ||||||||||| |||||||||||   | ||||| |||||||||||||||| |||| ||||||||||    
T  2544996 gtaaaaggagaaggttgtgttagacattgacagtcaacgtaaaactttgtggaatttctatgacat 2544931  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 22693196 - 22693247
Alignment:
Q  140 gggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatga 191  Q
    ||||||||| |||  |||||| |||||||||||||||||||||||| |||||    
T  22693196 gggttgtgtcaggcttcgacaaccaacgtaaaactttgtcgaatctttatga 22693247  T

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Target: scaffold0279 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 18382 - 18488
Alignment:
Q  99 aaatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagac 198  Q
    ||||| ||| || ||||| |||||||| | ||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |||    
T  18382 aaatcctgccaaagccggtcccaagcccgggtaaaaggagaaggttgtgttaagcctcgacaaccaacgtaaaactttgtcgaatctctatgacatggac 18481  T
Q  199 caaatac 205  Q
    |||||||    
T  18482 caaatac 18488  T

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Target: scaffold0001 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 440116 - 440189
Alignment:
Q  132 aaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  440116 aaaggagaggattgtgttaggcctcgacagccaacgtaaaactttgtcaaatctctatgacatggaccaaatac 440189  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 54529556 - 54529636
Alignment:
Q  112 gccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgaca 193  Q
    ||||| |||||| ||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  54529556 gccggtcccaaggctgggtaaaaagagagggttgtgttaggcctcgacagccaacgtaacactttgtcgaatc-ctatgaca 54529636  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 27453241 - 27453156
Alignment:
Q  118 cccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    |||||||| |||||||||||   |||| ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  27453241 cccaagcccgagtaaaaggaa--ggttatgttatgcctcgacagccaacgtaaaactttgccgaatctctatgacatggaccaaatac 27453156  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 38475129 - 38475067
Alignment:
Q  132 aaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||| ||||| |||||||||| ||| | |||||||||||||| ||||||||||||||||||||    
T  38475129 aaagaagaggcttgtgttaggcctcaatagccaacgtaaaacgttgtcgaatctctatgacat 38475067  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 16000259 - 16000320
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||||||||||||||||||||    |||||||| |||||||||||||||| || ||||||||||||    
T  16000259 gtaaaaggagagggttgtgtt----ctcgacagtcaacgtaaaactttgttgagtctctatgacat 16000320  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 31164642 - 31164579
Alignment:
Q  142 gttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    |||||||||||| |||||| |||| | ||||||||||| |||||||||||||| || |||||||    
T  31164642 gttgtgttaggtttcgacaaccaatgcaaaactttgtcaaatctctatgacatggatcaaatac 31164579  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 49359572 - 49359514
Alignment:
Q  132 aaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatga 191  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||    
T  49359572 aaaggaaagggttgtgtt-ggtctctacagccaacgtaaaactttgttgaatctccatga 49359514  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 883596 - 883520
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||| |||| ||||||||||| ||  ||||  ||| ||| ||||| ||||||||||||||||| ||||||||||    
T  883596 gtaaaagcagagagttgtgttaggccttcacagtaaacataatactttatcgaatctctatgacatggaccaaatac 883520  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 42232071 - 42232147
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    ||||||||||| || || |||||  ||| ||| ||||| ||| ||||| |||||||||||| | |||||||||||||    
T  42232071 gtaaaaggagaaggctgagttagacctctacaaccaacataatactttatcgaatctctataatatagaccaaatac 42232147  T

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Target: scaffold0024 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 48345 - 48249
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatac 205  Q
    |||||||| |||||| | | ||||||||||||||||  |||||| ||||||||||||| || |||||| ||||||||||||||||| || |||||||    
T  48345 aaggccggtcccaagtccgggtaaaaggagagggtttcgttaggcctcgacagccaacatataactttatcgaatctctatgacatggatcaaatac 48249  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 46833228 - 46833158
Alignment:
Q  131 aaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaata 204  Q
    |||||||||||||||||||||| ||| ||   |||||||||||||||||||||||||||||||| |||||||||    
T  46833228 aaaaggagagggttgtgttaggcctcaac---caacgtaaaactttgtcgaatctctatgacatggaccaaata 46833158  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 30089119 - 30089175
Alignment:
Q  129 gtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatct 185  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  30089119 gtaaaaggagagggttgtattaagtctcgacagctaacgtaaaactttgtcgaatct 30089175  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 36232115 - 36232176
Alignment:
Q  141 ggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaata 204  Q
    |||||||||||| ||||||||||||| |||||||||||||||  |||||||||| |||||||||    
T  36232115 ggttgtgttaggcctcgacagccaacataaaactttgtcgaa--tctatgacatggaccaaata 36232176  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 26044510 - 26044605
Alignment:
Q  112 gccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacatagaccaaatactt 207  Q
    |||||||||||| |||| | ||||||||||| |||||||||| || ||| || |||||||| | |||| ||| || ||||||||||||||| ||||    
T  26044510 gccggccccaagtctgaatgaaaggagagggctgtgttaggtatcaacaaccgacgtaaaattgtgtcaaatttcaatgacatagaccaaaaactt 26044605  T

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Target: scaffold0245 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 16683 - 16598
Alignment:
Q  109 aaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttgtcgaatctctatgacat 194  Q
    |||||||| |||||||| | ||||||  |||||||||||| ||| || |||||||||||||||||||| | |||||||||||||||    
T  16683 aaggccggtcccaagcccgggtaaaaaaagagggttgtgtcaggccttgacagccaacgtaaaactttttagaatctctatgacat 16598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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