View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5961_low_61 (Length: 219)
Name: NF5961_low_61
Description: NF5961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5961_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1307366 - 1307555
Alignment:
| Q |
18 |
aatagttgtagtagaaacacactgtttggtgttaatttgaatgtttatgaacttgatttcggtctagnnnnnnnn--gtagtaatttttatagtgtgttg |
115 |
Q |
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| T |
1307366 |
aatatttgtagtagaaacacactgtttggtgttaatttcaatgtttatgaacttgatttcggtctagttttttttttgtagtaatttttatagtgtgttg |
1307465 |
T |
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| Q |
116 |
agttaaatatttagttataggttattttgtgcatagagtcataataattttgaatattaatggacttgattgaaatgtgtactgcctttg |
205 |
Q |
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| T |
1307466 |
agttaactatttagttataggttattttgtgcatagagtcataataattttgaatattaatggacttgattgaaatgtgtactgcctttg |
1307555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 1307287 - 1307321
Alignment:
| Q |
42 |
tttggtgttaatttgaatgtttatgaacttgattt |
76 |
Q |
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| T |
1307287 |
tttggtgttaatttgaacgtttatgaacttgattt |
1307321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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