View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_high_14 (Length: 379)
Name: NF5962_high_14
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 52512022 - 52511836
Alignment:
| Q |
29 |
cttagtaaacgactaaattgacagattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctc |
128 |
Q |
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| T |
52512022 |
cttagtaaacgactaaattgactgattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctc |
52511923 |
T |
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| Q |
129 |
aggaggcctgacgcaaagaaactgcttgataagatgtataatggacgcctacttccaaattcttagaaggtatgtatactactcatg |
215 |
Q |
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| T |
52511922 |
aggaggcctgacgcaaagaaactgcttgataagatgtataatggacgcctacttcccaattcttagaaggtatgtatactactcatg |
52511836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 225 - 379
Target Start/End: Complemental strand, 52511795 - 52511638
Alignment:
| Q |
225 |
atgttaatcttctgttgctgctgctg---ttatattcactgtactacatccttttcagtccttcttgtttgtgaccacaactgaattgaggcttgctaat |
321 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511795 |
atgttaatcttctgttgctgctgctgctgttatattcactgtactacatccttttcagtccttcttgtttgtgaccacaactgaattgaggcttgctaat |
52511696 |
T |
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| Q |
322 |
gcttatttctggtccaccagtgactgcaatggtaatcggctcctagcttagaatatat |
379 |
Q |
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| T |
52511695 |
gcttatttctggtccaccagtgactgcaatggtaatcggctcctagcttagaatatat |
52511638 |
T |
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