View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5962_high_16 (Length: 361)

Name: NF5962_high_16
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5962_high_16
NF5962_high_16
[»] chr5 (2 HSPs)
chr5 (34-178)||(26153441-26153585)
chr5 (249-318)||(26153251-26153320)
[»] chr3 (5 HSPs)
chr3 (94-178)||(4086402-4086485)
chr3 (210-311)||(4086193-4086297)
chr3 (248-314)||(7755540-7755606)
chr3 (88-171)||(7755765-7755842)
chr3 (48-80)||(7755872-7755904)
[»] chr2 (1 HSPs)
chr2 (248-318)||(2210355-2210426)
[»] chr8 (3 HSPs)
chr8 (248-318)||(41294491-41294561)
chr8 (95-171)||(41294256-41294332)
chr8 (48-80)||(41294188-41294220)
[»] chr4 (2 HSPs)
chr4 (109-178)||(43470706-43470775)
chr4 (210-318)||(43470873-43470985)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 26153585 - 26153441
Alignment:
Q  34 aaacaatagtgttgtatggtacgagacttttgttcgcacaaaatgcacaacactatatatgggctcattttaattattttaaacaaattaaatatgctcc 133  Q
    ||||| ||||| | ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||     
T  26153585 aaacagtagtgctatatggtacgagacttttgttcgcgcaaaatgcacgacactatatatgggctcattttaattattttaaagaaattaaatatgctca 26153486  T
Q  134 taatagaatcctatatagctatcattgcatatgatgttagtatca 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26153485 taatagaatcctatatagctatcattgcatatgatgttagtatca 26153441  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 26153320 - 26153251
Alignment:
Q  249 agaaatttaatctagcttgttggattttgaaaataaaataaatagttaccattcgtctaaattcgtgcaa 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26153320 agaaatttaatctagcttgttggattttgaaaataaaatgaatagttaccattcgtctaaattcgtgcaa 26153251  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 4086485 - 4086402
Alignment:
Q  94 gggctcattttaattattttaaacaaattaaatatgctcctaatagaatcctatatagctatcattgcatatgatgttagtatca 178  Q
    ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  4086485 gggctcaatttaattattttaaacaaattaaatatgctcata-tagaatcctatatagctatcattgcatatgatgttagtatca 4086402  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 4086297 - 4086193
Alignment:
Q  210 tgagaagttttggcagata-tggttactgttgtatacttta--gaaatttaatctagcttgttggattttgaaaataaaataaatagttaccattcgtct 306  Q
    |||||||| |||||||||  ||||||||| |||||||| ||  |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||    
T  4086297 tgagaagtgttggcagatggtggttactgctgtatactctatagaaatttaatctagcttgttgggttttgaaaataaaatgaataattaccattcgtct 4086198  T
Q  307 aaatt 311  Q
    |||||    
T  4086197 aaatt 4086193  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 7755606 - 7755540
Alignment:
Q  248 tagaaatttaatctagcttgttggattttgaaaataaaataaatagttaccattcgtctaaattcgt 314  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| |||||||||    
T  7755606 tagaaatttaatctagcttgttgggttttaaaaataaaatgaatagttactattcgtataaattcgt 7755540  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 7755842 - 7755765
Alignment:
Q  88 atatatgggctcattttaattattttaaacaaattaaatatgctcctaatagaatcctatatagctatcattgcatatgatgtt 171  Q
    ||||||||||||||||||||||||||||||  |||      ||||  |||||||||||||||||||||||||||||||||||||    
T  7755842 atatatgggctcattttaattattttaaacggatt------gctcacaatagaatcctatatagctatcattgcatatgatgtt 7755765  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 7755904 - 7755872
Alignment:
Q  48 tatggtacgagacttttgttcgcacaaaatgca 80  Q
    ||||||||||||||||| |||||||||||||||    
T  7755904 tatggtacgagacttttcttcgcacaaaatgca 7755872  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 2210355 - 2210426
Alignment:
Q  248 tagaaatttaatctagcttgttggattttgaaaataaaataaatagtta-ccattcgtctaaattcgtgcaa 318  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2210355 tagaaatttaatctagcttgttggattttgaaaataaaatgaatagttacccattcgtctaaattcgtgcaa 2210426  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 41294491 - 41294561
Alignment:
Q  248 tagaaatttaatctagcttgttggattttgaaaataaaataaatagttaccattcgtctaaattcgtgcaa 318  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||    
T  41294491 tagaaatttaatctagcttgttgggttttgaaaataaaatgaatagttactattcgtataaattcgtgcaa 41294561  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 41294256 - 41294332
Alignment:
Q  95 ggctcattttaattattttaaacaaattaaatatgctcctaatagaatcctatatagctatcattgcatatgatgtt 171  Q
    |||||||||||||||||||||||  |||||||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  41294256 ggctcattttaattattttaaacggattaaatatgctcacaatagaatcttatataactatcattgcatatgatgtt 41294332  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 41294188 - 41294220
Alignment:
Q  48 tatggtacgagacttttgttcgcacaaaatgca 80  Q
    ||||||||||||||||| |||||||||||||||    
T  41294188 tatggtacgagacttttcttcgcacaaaatgca 41294220  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 43470706 - 43470775
Alignment:
Q  109 attttaaacaaattaaatatgctcctaatagaatcctatatagctatcattgcatatgatgttagtatca 178  Q
    |||||||||||||| |||||||||  || ||||||||||||| |||||||||||||||||||||||||||    
T  43470706 attttaaacaaatttaatatgctcacaagagaatcctatatatctatcattgcatatgatgttagtatca 43470775  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 43470873 - 43470985
Alignment:
Q  210 tgagaagttttggcagata-tggttactg-ttgtatacttta--gaaatttaatctagcttgttggattttgaaaataaaataaatagttaccattcgtc 305  Q
    |||||||| |||||||||  ||||||||  ||||||||||||  |||||||||||||||||| ||  ||||  |||||||||||||||| ||||||||||    
T  43470873 tgagaagtgttggcagatggtggttactacttgtatactttatagaaatttaatctagcttgctgtgttttacaaataaaataaatagtcaccattcgtc 43470972  T
Q  306 taaattcgtgcaa 318  Q
    |||||| ||||||    
T  43470973 taaatttgtgcaa 43470985  T

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