View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_high_17 (Length: 334)
Name: NF5962_high_17
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 5146092 - 5146410
Alignment:
| Q |
1 |
cttgagtgagaagaaaatggatgtgatgaataatgaaggagtggtaaagaaaaaagattatgttagagggtttagtgaaaagaagatggtggttaatgaa |
100 |
Q |
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| T |
5146092 |
cttgagtgagaagaaaatggatgtgatgaataatgaaggagtggtaaagaaaaaagattatgttagagggtttagtgaaaagaagatggtggttaatgaa |
5146191 |
T |
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| Q |
101 |
gggattaacaagaagaaagattatgttagaagatggagtgagaagaaaatggttactaataatgaaggattagtttctccaagaagtggtggtgattatg |
200 |
Q |
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| T |
5146192 |
gggattaacaaaaagaaagattatgttagaagatggagtgagaagaaaatggttactaataatgaaggattagtttctccaagaagtggtggtgattatg |
5146291 |
T |
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| Q |
201 |
atgatgatgcttccaagaacaagattcaagcaaaacattcacacaagaaaagttggtgatcattgtatgctgttcagaattcagatcactctcttatttt |
300 |
Q |
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| T |
5146292 |
atgatgatgcttccaagaacaagattcaagcaaaacattcacacaagaaaagttggtgatcattgtatgctgttcagaattcagatcactctcttatttt |
5146391 |
T |
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| Q |
301 |
tgtttcttcatgtttgcat |
319 |
Q |
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| T |
5146392 |
tgtttcttcatgtttgcat |
5146410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 173 - 309
Target Start/End: Original strand, 5389102 - 5389228
Alignment:
| Q |
173 |
gtttctccaagaagtggtggtgattatgatgatgatgcttccaagaacaagattcaagcaaaacattcacacaagaaaagttggtgatcattgtatgctg |
272 |
Q |
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||||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
5389102 |
gtttctccaagaagtggtggtgaatatgatgaag---cttccaagaacaagattcaaacaaaacattcacacaagaaaaattggtgatcattgaatgctg |
5389198 |
T |
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| Q |
273 |
ttcagaattcagatcactctcttatttttgtttcttc |
309 |
Q |
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| T |
5389199 |
-------ttcagatcactcccttatttttgtttcttc |
5389228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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