View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_high_21 (Length: 250)
Name: NF5962_high_21
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 1160824 - 1160941
Alignment:
| Q |
117 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagacctataattattggaacaaa |
216 |
Q |
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| T |
1160824 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagatctataattattggaacaaa |
1160923 |
T |
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| Q |
217 |
cttaattacgatataaac |
234 |
Q |
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| T |
1160924 |
cttaattaccatataaac |
1160941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 1160714 - 1160755
Alignment:
| Q |
68 |
tgaaagtaatttaatgtggtcccaaaaaatggtaatagaaag |
109 |
Q |
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| T |
1160714 |
tgaaagtaattcaatgtggtcccaaaaaatggtaatagaaag |
1160755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 1160682 - 1160712
Alignment:
| Q |
12 |
aaaggggttatataaagactttaattgaagg |
42 |
Q |
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| T |
1160682 |
aaaggggttatataaagactttaattgaagg |
1160712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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