View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_high_23 (Length: 240)
Name: NF5962_high_23
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52512065 - 52512307
Alignment:
| Q |
1 |
acaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacct--------- |
91 |
Q |
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| T |
52512065 |
acaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacctaaatgaaat |
52512164 |
T |
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| Q |
92 |
-aaatgaaaagtagtattataataaggaagaagaatattattat-----------taaaaaagaatgaggagaaaagagaagaggactcacaaatgatgt |
179 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52512165 |
gaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaagagaagaggactcacaaatgatgt |
52512264 |
T |
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| Q |
180 |
taccacttccaccacaatttctgcaaccaggaggcttatcaag |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512265 |
taccacttccaccacaatttctgcaaccaggaggcttatcaag |
52512307 |
T |
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