View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_high_25 (Length: 227)
Name: NF5962_high_25
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_25 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 916831 - 916609
Alignment:
| Q |
1 |
ccttaagaaaagcatatatagataattaaacattatttttattagctaggacatacaaagttttaatttaaagttacattgaagaccattttaaaaccat |
100 |
Q |
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| T |
916831 |
ccttaagaaaagcatatatagataattaaacattatttttattag----gacatacaaagttttaatttaaagttacattgaagaccattttaaaaccat |
916736 |
T |
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| Q |
101 |
acttgaggagatttgaactcagtctctattgtaggacattcaaagtaacttaatttataatatatgtattaaatatttttgaagtagcttctatatgtat |
200 |
Q |
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| T |
916735 |
acttgaggagatttgaactcagtctctattgtaggacattcaaagtaacttaatttataatatatgtattaaatatttttgaagtagcttctatatgtat |
916636 |
T |
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| Q |
201 |
agtggttactattgaaggatatagaat |
227 |
Q |
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| T |
916635 |
agtggttactattgaaggatatagaat |
916609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 910328 - 910137
Alignment:
| Q |
28 |
aaacattatttttattagctaggacatacaaagttttaatttaaagttacattgaagaccattttaaaaccatacttgaggagatttgaactcagtctct |
127 |
Q |
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| T |
910328 |
aaacattatttttattagcgaggacgtacaaagtttttatttaaagttacattgaagaccatttttcaaccatacttgaggagatttgaactccgtctct |
910229 |
T |
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| Q |
128 |
attgtaggacattcaaagtaacttaatttataatatatgtattaaatatttttgaagtagcttc--tatatgtatagtggttactattgaag |
217 |
Q |
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| T |
910228 |
atcgtaggacattcaaagtaactcaatttataatacaagtattaagtatttttgaagttgcttctatatatatatagtggttattattgaag |
910137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 924878 - 924688
Alignment:
| Q |
8 |
aaaagcatatataga-taattaaacattatttttattagctaggacatacaaagttttaatttaaagttacattgaagaccattttaaaaccatacttga |
106 |
Q |
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| T |
924878 |
aaaagcatatatagagtaattaaacattatttttatttg----gacacacaa-gtctta-tttaaagttacattgaagaccattttacaaccatacttga |
924785 |
T |
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| Q |
107 |
g--gagatttgaactcagtctctattgtaggacattcaaagtaacttaatttataatatatgtattaaatatttttgaagtagcttctatatgtata |
201 |
Q |
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| T |
924784 |
gaggagatttgaactcagtctctatcgtaggacattcaaagtaacttaatttataatacagctattaattatttttgaagtagcttctatatatata |
924688 |
T |
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