View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_high_5 (Length: 548)
Name: NF5962_high_5
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 17 - 540
Target Start/End: Original strand, 40058103 - 40058625
Alignment:
| Q |
17 |
aagtctcccctttctccatgcaccatatttgtactcttttacaccttaatgatacctcaaaaacatacaatttcaacccttgatttaagattgtccgttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058103 |
aagtctcccctttctccatgcaccatatttgtactcttttacaccttaatgatacctcaaaaacatacaatttcaacccttgatttaagattgtccgttt |
40058202 |
T |
|
| Q |
117 |
tatatgtgcatataggggacacaaccaaaaactctcatatttttaaggtttggagcatgaccaaacacatctcttctaggtgtcttcataccaaatttag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
40058203 |
tatatgtgcatataggggacacaaccaaaaactctcatatttttaaggtttggagcatgaccaaccacatctcttctag-tgtcttcataccaaatttag |
40058301 |
T |
|
| Q |
217 |
tgtaagtgaatctattcatgaaataagaaaaaattattacactgtttcttcccaaaaaagagtatatttattagcatttgacatcaaacatataactatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| | || |
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| T |
40058302 |
tgtaagtgaatctattcatgaaataagaaaaaattattacactgtttcatcccaaaaaagagtagagttattagcatttgacatcaaacatataaatctc |
40058401 |
T |
|
| Q |
317 |
tccatgatttttctgtccatcctctagtgatcaagaccattttcccgaggagttcctctaatttgtttatgcctaactattccactatccttgcaaattt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058402 |
tccatgatttttctgtccatcctctagtgatcaagacaattttcccgaggagttcctctaatttgtttatgcctaactattccactatccttgcaaattt |
40058501 |
T |
|
| Q |
417 |
gattaaactctccagcataagaaataccttgcttcaactatgaaagaaactcttcttttcccaaatatacaatgttcaaaaaattcaagatcttcaatgt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058502 |
gattaaactctccagcataagaaataccttgcttcaactatgaaagaaactcttcttttcccaaatatacaatgttcaaaaaattcaagatcttcaatgt |
40058601 |
T |
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| Q |
517 |
tgtccttcctgaagagcctttgct |
540 |
Q |
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|||||||||||||||||||||||| |
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| T |
40058602 |
tgtccttcctgaagagcctttgct |
40058625 |
T |
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