View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5962_high_6 (Length: 508)
Name: NF5962_high_6
Description: NF5962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5962_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 9 - 494
Target Start/End: Original strand, 47835656 - 47836141
Alignment:
| Q |
9 |
gaagaatatagattgacattcatttatatcatatacatagtgtttcttaatatctacggtgttccgtaacaatggattggacctcttttatgttctttga |
108 |
Q |
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| T |
47835656 |
gaagaatatagattgacattcatttatatcatatacatagtgtttcttaatatctacggtgttccgtaacaatggattggacctcttttatgttctttga |
47835755 |
T |
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| Q |
109 |
gttgtcattcatgatatttattctttaaagtattttataataaatttttaccattcgtctgttttttggcataactactatttaaacttttgtttctttt |
208 |
Q |
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| T |
47835756 |
gttgtcattcatgatatttattctttaaagtattttataataaatttttaccattcgtctgttttttggcataactactatttaaacttttgtttctttt |
47835855 |
T |
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| Q |
209 |
aaacttcttcttctaggatgatgcaggatatatatgtaagatgtttggtgatggtgtgggacagacttgtaagccaagcatgtgcatggtacaatgttac |
308 |
Q |
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| T |
47835856 |
aaacttcttcttctaggatgatgcaggatatatatgtaagatgtttggtgatggtgtgggacagacttgtaagccaagcatgtgcatggtacaatgttac |
47835955 |
T |
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| Q |
309 |
ttttgtggaggaacaaataattttaagattatctctagtagagaaatagatagcatacattcgagaacaggcttcagggacatgcatctggttgcaagac |
408 |
Q |
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| T |
47835956 |
ttttgtggaggaacaaataattttaagattatctctagtagagaaatagatagcatacattcgagaacaggcttcagggacatgcatctggttgcaagac |
47836055 |
T |
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| Q |
409 |
aaaaggtcaattttctagctgagttggtttatatatgttagggttaaatatgtttcgtaccaatcaaattaccatattttgtttct |
494 |
Q |
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| T |
47836056 |
aaaaggtcaattttctagctgagttggtttatatatgttagggttaaatatgtttcgtaccaatcaaattaccatattttgtttct |
47836141 |
T |
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